RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TXNRD3Q86VQ6 643 aa24.36■■□□□ 1.49
CLN3-250ENST00000636839 KBTBD3Q8NAB2 608 aa24.36■■□□□ 1.49
CLN3-250ENST00000636839 GPR101Q96P66 508 aaPredicted RBP24.36■■□□□ 1.49
CLN3-250ENST00000636839 ANKIB1Q9P2G1 1089 aa24.36■■□□□ 1.49
CLN3-250ENST00000636839 ZBTB7AO95365 584 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 ARID4AP29374 1257 aaPredicted RBP24.35■■□□□ 1.49
CLN3-250ENST00000636839 RASGRF1Q13972 1273 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 CRAMP1Q96RY5 1269 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 ANO2Q9NQ90 1003 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 PDE6BP35913 854 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 KCNJ4P48050 445 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 GPSM2P81274 684 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 ZNF512BQ96KM6 892 aaPredicted RBP24.35■■□□□ 1.49
CLN3-250ENST00000636839 ANKRD2Q9GZV1 360 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 HMG20BQ9P0W2 317 aa24.35■■□□□ 1.49
CLN3-250ENST00000636839 REC8O95072 547 aa24.34■■□□□ 1.49
CLN3-250ENST00000636839 CYP2E1P05181 493 aaPredicted RBP24.34■■□□□ 1.49
CLN3-250ENST00000636839 CHRNA5P30532 468 aa24.34■■□□□ 1.49
CLN3-250ENST00000636839 RBM25P49756 843 aaKnown RBP24.34■■□□□ 1.49
CLN3-250ENST00000636839 FAM84BQ96KN1 310 aaPredicted RBP24.34■■□□□ 1.49
CLN3-250ENST00000636839 SEC62Q99442 399 aaKnown RBP24.34■■□□□ 1.49
CLN3-250ENST00000636839 ZNF804BA4D1E1 1349 aa24.34■■□□□ 1.49
CLN3-250ENST00000636839 ARAP2Q8WZ64 1704 aa24.33■■□□□ 1.49
CLN3-250ENST00000636839 AKAP11Q9UKA4 1901 aa24.33■■□□□ 1.49
CLN3-250ENST00000636839 BBOX1O75936 387 aa24.33■■□□□ 1.49
CLN3-250ENST00000636839 NPR1P16066 1061 aa24.33■■□□□ 1.49
CLN3-250ENST00000636839 R3HDM1Q15032 1099 aaKnown RBP24.33■■□□□ 1.49
CLN3-250ENST00000636839 C2CD5Q86YS7 1000 aa24.33■■□□□ 1.49
CLN3-250ENST00000636839 KIF2CQ99661 725 aa24.33■■□□□ 1.49
CLN3-250ENST00000636839 PIH1D3Q9NQM4 214 aaKnown RBP24.33■■□□□ 1.49
CLN3-250ENST00000636839 SPATA5Q8NB90 893 aa24.32■■□□□ 1.48
CLN3-250ENST00000636839 ZNF622Q969S3 477 aaKnown RBP eCLIP24.32■■□□□ 1.48
CLN3-250ENST00000636839 NSFL1CQ9UNZ2 370 aaKnown RBP24.32■■□□□ 1.48
CLN3-250ENST00000636839 UQCRFS1P1P0C7P4 283 aa24.32■■□□□ 1.48
CLN3-250ENST00000636839 COL11A2P13942 1736 aaPredicted RBP24.32■■□□□ 1.48
CLN3-250ENST00000636839 ZNF589Q86UQ0 364 aaPredicted RBP24.31■■□□□ 1.48
CLN3-250ENST00000636839 ATF5Q9Y2D1 282 aaPredicted RBP24.31■■□□□ 1.48
CLN3-250ENST00000636839 PPEF1O14829 653 aaPredicted RBP24.3■■□□□ 1.48
CLN3-250ENST00000636839 PTH1RQ03431 593 aa24.3■■□□□ 1.48
CLN3-250ENST00000636839 CCDC129Q6ZRS4 1044 aa24.3■■□□□ 1.48
CLN3-250ENST00000636839 LSG1Q9H089 658 aaKnown RBP24.3■■□□□ 1.48
CLN3-250ENST00000636839 IRS2Q9Y4H2 1338 aa24.3■■□□□ 1.48
CLN3-250ENST00000636839 MASTLQ96GX5 879 aa24.3■■□□□ 1.48
CLN3-250ENST00000636839 HIP1O00291 1037 aa24.29■■□□□ 1.48
CLN3-250ENST00000636839 FBXO33Q7Z6M2 555 aa24.29■■□□□ 1.48
CLN3-250ENST00000636839 SLC16A10Q8TF71 515 aa24.29■■□□□ 1.48
CLN3-250ENST00000636839 RUFY2Q8WXA3 655 aa24.29■■□□□ 1.48
CLN3-250ENST00000636839 XDHP47989 1333 aa24.29■■□□□ 1.48
CLN3-250ENST00000636839 PSDA5PKW4 1024 aaPredicted RBP24.28■■□□□ 1.48
CLN3-250ENST00000636839 CAVIN4Q5BKX8 364 aa24.28■■□□□ 1.48
CLN3-250ENST00000636839 VPS37DQ86XT2 251 aa24.28■■□□□ 1.48
CLN3-250ENST00000636839 H0YIN7 160 aa24.27■■□□□ 1.48
CLN3-250ENST00000636839 RNF113AO15541 343 aaKnown RBP24.27■■□□□ 1.48
CLN3-250ENST00000636839 POLLQ9UGP5 575 aa24.27■■□□□ 1.48
CLN3-250ENST00000636839 PALD1Q9ULE6 856 aa24.27■■□□□ 1.48
CLN3-250ENST00000636839 COL1A1P02452 1464 aaPredicted RBP24.27■■□□□ 1.48
CLN3-250ENST00000636839 UFL1O94874 794 aa24.27■■□□□ 1.48
CLN3-250ENST00000636839 SLC4A3P48751 1232 aa24.27■■□□□ 1.48
CLN3-250ENST00000636839 SP8Q8IXZ3 490 aa24.27■■□□□ 1.48
CLN3-250ENST00000636839 IPO9Q96P70 1041 aaKnown RBP24.27■■□□□ 1.48
CLN3-250ENST00000636839 ATP6V0A2Q9Y487 856 aa24.27■■□□□ 1.48
CLN3-250ENST00000636839 IDH1O75874 414 aaKnown RBP24.26■■□□□ 1.47
CLN3-250ENST00000636839 ZNF219Q9P2Y4 722 aaPredicted RBP24.26■■□□□ 1.47
CLN3-250ENST00000636839 LEMD3Q9Y2U8 911 aa24.26■■□□□ 1.47
CLN3-250ENST00000636839 ALDH1B1P30837 517 aa24.25■■□□□ 1.47
CLN3-250ENST00000636839 HIBADHP31937 336 aaKnown RBP24.25■■□□□ 1.47
CLN3-250ENST00000636839 JAG2Q9Y219 1238 aa24.25■■□□□ 1.47
CLN3-250ENST00000636839 ZMYM1Q5SVZ6 1142 aa24.25■■□□□ 1.47
CLN3-250ENST00000636839 KIAA1211Q6ZU35 1233 aa24.25■■□□□ 1.47
CLN3-250ENST00000636839 OSBP2Q969R2 916 aa24.25■■□□□ 1.47
CLN3-250ENST00000636839 WWC3Q9ULE0 1092 aa24.25■■□□□ 1.47
CLN3-250ENST00000636839 MED23Q9ULK4 1368 aa24.25■■□□□ 1.47
CLN3-250ENST00000636839 MYO5AQ9Y4I1 1855 aaKnown RBP24.25■■□□□ 1.47
CLN3-250ENST00000636839 RFX7Q2KHR2 1363 aa24.24■■□□□ 1.47
CLN3-250ENST00000636839 TBC1D16Q8TBP0 767 aa24.24■■□□□ 1.47
CLN3-250ENST00000636839 GGA1Q9UJY5 639 aa24.24■■□□□ 1.47
CLN3-250ENST00000636839 M0R2C6 588 aa24.23■■□□□ 1.47
CLN3-250ENST00000636839 EIF5BO60841 1220 aaKnown RBP24.23■■□□□ 1.47
CLN3-250ENST00000636839 MCMDC2Q4G0Z9 681 aa24.23■■□□□ 1.47
CLN3-250ENST00000636839 GNL3LQ9NVN8 582 aaKnown RBP24.23■■□□□ 1.47
CLN3-250ENST00000636839 RAD50Q92878 1312 aa24.23■■□□□ 1.47
CLN3-250ENST00000636839 SLC9C2Q5TAH2 1124 aa24.23■■□□□ 1.47
CLN3-250ENST00000636839 PRPF40BQ6NWY9 871 aaKnown RBP24.23■■□□□ 1.47
CLN3-250ENST00000636839 PODXL2Q9NZ53 605 aa24.23■■□□□ 1.47
CLN3-250ENST00000636839 STYK1Q6J9G0 422 aa24.22■■□□□ 1.47
CLN3-250ENST00000636839 MAST3O60307 1309 aa24.22■■□□□ 1.47
CLN3-250ENST00000636839 CCDC171Q6TFL3 1326 aa24.22■■□□□ 1.47
CLN3-250ENST00000636839 A0A0G2JLW4 131 aa24.22■■□□□ 1.47
CLN3-250ENST00000636839 C6orf229H3BNL8 230 aa24.22■■□□□ 1.47
CLN3-250ENST00000636839 ATP2B4P23634 1241 aa24.22■■□□□ 1.47
CLN3-250ENST00000636839 TTF1Q15361 905 aaPredicted RBP24.22■■□□□ 1.47
CLN3-250ENST00000636839 WASHC4Q2M389 1173 aa24.22■■□□□ 1.47
CLN3-250ENST00000636839 PUS7LQ9H0K6 701 aaKnown RBP24.22■■□□□ 1.47
CLN3-250ENST00000636839 FRAT2O75474 233 aaPredicted RBP24.21■■□□□ 1.47
CLN3-250ENST00000636839 VPS53Q5VIR6 699 aa24.21■■□□□ 1.47
CLN3-250ENST00000636839 C10orf71Q711Q0 1435 aa24.21■■□□□ 1.47
CLN3-250ENST00000636839 CHAF1AQ13111 956 aaPredicted RBP24.2■■□□□ 1.47
CLN3-250ENST00000636839 TMC4Q7Z404 712 aa24.2■■□□□ 1.47
CLN3-250ENST00000636839 MTFR1LQ9H019 292 aa24.2■■□□□ 1.47
CLN3-250ENST00000636839 ABCF2Q9UG63 623 aa24.2■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms