RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 NIP7Q9Y221 180 aaKnown RBP eCLIP14□□□□□ -0.17
LINC00538-201ENST00000626109 NUP98P52948 1817 aa13.99□□□□□ -0.17
LINC00538-201ENST00000626109 ANKRD36CQ5JPF3 1778 aa13.99□□□□□ -0.17
LINC00538-201ENST00000626109 CWF19L2Q2TBE0 894 aaKnown RBP13.99□□□□□ -0.17
LINC00538-201ENST00000626109 ZNF34Q8IZ26 560 aa13.99□□□□□ -0.17
LINC00538-201ENST00000626109 NLGN1Q8N2Q7 840 aa13.99□□□□□ -0.17
LINC00538-201ENST00000626109 N4BP2Q86UW6 1770 aaPredicted RBP13.99□□□□□ -0.17
LINC00538-201ENST00000626109 NEURL1BA8MQ27 555 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 ZNF500O60304 480 aaPredicted RBP13.98□□□□□ -0.17
LINC00538-201ENST00000626109 IGKV5-2P06315 115 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 TRIM28Q13263 835 aaKnown RBP13.98□□□□□ -0.17
LINC00538-201ENST00000626109 PARP10Q53GL7 1025 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 TBC1D9BQ66K14 1250 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 BICDL1Q6ZP65 573 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 CCDC191Q8NCU4 936 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 CXorf38Q8TB03 319 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 SLC16A10Q8TF71 515 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 SETDB2Q96T68 719 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 C22orf23Q9BZE7 217 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 LNPKQ9C0E8 428 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 CWC25Q9NXE8 425 aaPredicted RBP13.98□□□□□ -0.17
LINC00538-201ENST00000626109 SH3BP1Q9Y3L3 701 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 TBC1D2Q9BYX2 928 aa13.98□□□□□ -0.17
LINC00538-201ENST00000626109 ZNF280DQ6N043 979 aa13.97□□□□□ -0.17
LINC00538-201ENST00000626109 GET4Q7L5D6 327 aaPredicted RBP13.97□□□□□ -0.17
LINC00538-201ENST00000626109 NLRP10Q86W26 655 aa13.97□□□□□ -0.17
LINC00538-201ENST00000626109 GCC1Q96CN9 775 aa13.97□□□□□ -0.17
LINC00538-201ENST00000626109 UBN2Q6ZU65 1347 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 PSDA5PKW4 1024 aaPredicted RBP13.96□□□□□ -0.17
LINC00538-201ENST00000626109 BDNFP23560 247 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 CALRP27797 417 aaKnown RBP13.96□□□□□ -0.17
LINC00538-201ENST00000626109 NUCB1Q02818 461 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 GCKRQ14397 625 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 NFIXQ14938 502 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 C4orf46Q504U0 113 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 EGFLAMQ63HQ2 1017 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 MSL1Q68DK7 614 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 PDGFDQ9GZP0 370 aaPredicted RBP13.96□□□□□ -0.17
LINC00538-201ENST00000626109 AFDNP55196 1824 aaKnown RBP13.96□□□□□ -0.17
LINC00538-201ENST00000626109 CARMIL3Q8ND23 1372 aa13.96□□□□□ -0.17
LINC00538-201ENST00000626109 IBTKQ9P2D0 1353 aaPredicted RBP13.96□□□□□ -0.17
LINC00538-201ENST00000626109 PPP1R42Q7Z4L9 355 aa13.96□□□□□ -0.18
LINC00538-201ENST00000626109 SLKQ9H2G2 1235 aaPredicted RBP13.96□□□□□ -0.18
LINC00538-201ENST00000626109 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.96□□□□□ -0.18
LINC00538-201ENST00000626109 C9orf78Q9NZ63 289 aaPredicted RBP13.96□□□□□ -0.18
LINC00538-201ENST00000626109 COMMD10Q9Y6G5 202 aa13.96□□□□□ -0.18
LINC00538-201ENST00000626109 CASZ1Q86V15 1759 aa13.95□□□□□ -0.18
LINC00538-201ENST00000626109 CREBRFQ8IUR6 639 aa13.95□□□□□ -0.18
LINC00538-201ENST00000626109 KCNB2Q92953 911 aa13.95□□□□□ -0.18
LINC00538-201ENST00000626109 UTP14AQ9BVJ6 771 aaKnown RBP13.95□□□□□ -0.18
LINC00538-201ENST00000626109 FAM177BA6PVY3 158 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 GRM8O00222 908 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 GYS2P54840 703 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 SUSD4Q5VX71 490 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 GLMNQ92990 594 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 NYXQ9GZU5 481 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 ANTXR1Q9H6X2 564 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 TRMT112Q9UI30 125 aaKnown RBP13.94□□□□□ -0.18
LINC00538-201ENST00000626109 COL24A1Q17RW2 1714 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 NPHP1O15259 732 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 DHX16O60231 1041 aaKnown RBP13.94□□□□□ -0.18
LINC00538-201ENST00000626109 GNAI3P08754 354 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 TM4SF1P30408 202 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 NOP9Q86U38 636 aaKnown RBP13.94□□□□□ -0.18
LINC00538-201ENST00000626109 CHD1LQ86WJ1 897 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 NBPF5PQ86XG9 351 aaPredicted RBP13.94□□□□□ -0.18
LINC00538-201ENST00000626109 CACTIN-AS1Q8N1I8 211 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 MTFR1LQ9H019 292 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 VRTNQ9H8Y1 702 aa13.94□□□□□ -0.18
LINC00538-201ENST00000626109 PCCAP05165 728 aaPredicted RBP13.93□□□□□ -0.18
LINC00538-201ENST00000626109 MMP10P09238 476 aa13.93□□□□□ -0.18
LINC00538-201ENST00000626109 ZBTB38Q8NAP3 1195 aaPredicted RBP13.93□□□□□ -0.18
LINC00538-201ENST00000626109 MEIS3Q99687 375 aa13.93□□□□□ -0.18
LINC00538-201ENST00000626109 PARP3Q9Y6F1 533 aa13.93□□□□□ -0.18
LINC00538-201ENST00000626109 TLDC2A0PJX2 215 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 ZBTB7BO15156 539 aaPredicted RBP13.92□□□□□ -0.18
LINC00538-201ENST00000626109 ZBTB7AO95365 584 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 NTSR2O95665 410 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 UBTFL1P0CB47 393 aaPredicted RBP13.92□□□□□ -0.18
LINC00538-201ENST00000626109 DDR1Q08345 913 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 TPTE2Q6XPS3 522 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 UBE3BQ7Z3V4 1068 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 HSCBQ8IWL3 235 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 USP44Q9H0E7 712 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 HDAC5Q9UQL6 1122 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 SH3TC1Q8TE82 1336 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 POM121CA8CG34 1229 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 H7C1W4 665 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 POLRMTO00411 1230 aaKnown RBP13.92□□□□□ -0.18
LINC00538-201ENST00000626109 SERPINB2P05120 415 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 MLLT3P42568 568 aaPredicted RBP13.92□□□□□ -0.18
LINC00538-201ENST00000626109 CNBD1Q8NA66 436 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 CCDC85AQ96PX6 553 aaPredicted RBP13.92□□□□□ -0.18
LINC00538-201ENST00000626109 CHMP5Q9NZZ3 219 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 WWC3Q9ULE0 1092 aa13.92□□□□□ -0.18
LINC00538-201ENST00000626109 UTYO14607 1347 aa13.91□□□□□ -0.18
LINC00538-201ENST00000626109 NBPF7P0C2Y1 421 aaPredicted RBP13.91□□□□□ -0.18
LINC00538-201ENST00000626109 BMP2KLQ5H9B9 411 aa13.91□□□□□ -0.18
LINC00538-201ENST00000626109 FAM89AQ96GI7 184 aa13.91□□□□□ -0.18
LINC00538-201ENST00000626109 CCDC189A1A4V9 331 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms