RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 PEAR1Q5VY43 1037 aaPredicted RBP6.38□□□□□ -1.39
CKS1BP3-201ENST00000600888 CEP135Q66GS9 1140 aa6.38□□□□□ -1.39
CKS1BP3-201ENST00000600888 ILDR2Q71H61 639 aa6.38□□□□□ -1.39
CKS1BP3-201ENST00000600888 GALNT12Q8IXK2 581 aa6.38□□□□□ -1.39
CKS1BP3-201ENST00000600888 OSMRQ99650 979 aa6.38□□□□□ -1.39
CKS1BP3-201ENST00000600888 TRIM33Q9UPN9 1127 aa6.38□□□□□ -1.39
CKS1BP3-201ENST00000600888 ATAD2BQ9ULI0 1458 aa6.38□□□□□ -1.39
CKS1BP3-201ENST00000600888 RNF225M0QZC1 329 aaPredicted RBP6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 TRPA1O75762 1119 aa6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 SMNDC1O75940 238 aaKnown RBP eCLIP6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 CCDC27Q2M243 656 aa6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 TRAPPC3LQ5T215 181 aa6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 MSL1Q68DK7 614 aa6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 GDF6Q6KF10 455 aaPredicted RBP6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 DMRTC2Q8IXT2 367 aaPredicted RBP6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 CCDC74AQ96AQ1 378 aa6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 POP1Q99575 1024 aaKnown RBP6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 LATS2Q9NRM7 1088 aa6.37□□□□□ -1.39
CKS1BP3-201ENST00000600888 ANKRD33BA6NCL7 494 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 PDE2AO00408 941 aaPredicted RBP6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 COL8A1P27658 744 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 BAG6P46379 1132 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 FMR1Q06787 632 aaKnown RBP eCLIP6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 KCNMA1Q12791 1236 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 DNAJC14Q6Y2X3 702 aaPredicted RBP6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 WFDC8Q8IUA0 241 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 CACTIN-AS1Q8N1I8 211 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 IL22RA1Q8N6P7 574 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 ZKSCAN3Q9BRR0 538 aa6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 NOP53Q9NZM5 478 aaKnown RBP6.36□□□□□ -1.39
CKS1BP3-201ENST00000600888 A0A1W2PP55 124 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 SPDYE3A6NKU9 549 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 MAPK8P45983 427 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 GSK3AP49840 483 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 ENOX2Q16206 610 aaKnown RBP6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 KIAA0319Q5VV43 1072 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 ADAMTSL4Q6UY14 1074 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 TMEM102Q8N9M5 508 aaPredicted RBP6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 NXPE3Q969Y0 559 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 HHIPQ96QV1 700 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 LACRTQ9GZZ8 138 aa6.35□□□□□ -1.39
CKS1BP3-201ENST00000600888 PNMA6FA0A0J9YX94 578 aa6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 PTPRAP18433 802 aa6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 RASSF7Q02833 373 aa6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 TRIM28Q13263 835 aaKnown RBP6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 TMCO4Q5TGY1 634 aa6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 EPS8L3Q8TE67 593 aaKnown RBP6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 ADAM19Q9H013 955 aa6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 NPHS2Q9NP85 383 aa6.34□□□□□ -1.39
CKS1BP3-201ENST00000600888 MROH2BQ7Z745 1585 aa6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 A0A0A0MRY4 1105 aa6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 P4HBP07237 508 aaKnown RBP6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 CDC27P30260 824 aa6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 ALYREFQ86V81 257 aaKnown RBP6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 BHLHE41Q9C0J9 482 aaPredicted RBP6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 MUC3BQ9H195 1237 aa6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 SH2B1Q9NRF2 756 aaPredicted RBP6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 PPME1Q9Y570 386 aa6.33□□□□□ -1.4
CKS1BP3-201ENST00000600888 RAC1P63000 192 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 COL19A1Q14993 1142 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 PRRT3Q5FWE3 981 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 CCNJLQ8IV13 435 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 DTWD1Q8N5C7 304 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 TCF12Q99081 682 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 EHD4Q9H223 541 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 LIN7BQ9HAP6 207 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 NLRP2Q9NX02 1062 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 WWC3Q9ULE0 1092 aa6.32□□□□□ -1.4
CKS1BP3-201ENST00000600888 BAZ1BQ9UIG0 1483 aaKnown RBP6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 FAM177BA6PVY3 158 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 FAM229AH3BQW9 127 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 LINC01387J3KSC0 135 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 GADD45BO75293 160 aaPredicted RBP6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 GDF11O95390 407 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 ERCC3P19447 782 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 EPHA1P21709 976 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 ALG1LQ6GMV1 187 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 PI16Q6UXB8 463 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 NPAS4Q8IUM7 802 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 FMR1NBQ8N0W7 255 aaPredicted RBP6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 ASAP3Q8TDY4 903 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 BSNDQ8WZ55 320 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 DCAF5Q96JK2 942 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 SETDB2Q96T68 719 aa6.31□□□□□ -1.4
CKS1BP3-201ENST00000600888 METTL12A8MUP2 240 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 LDHBP07195 334 aaKnown RBP6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 SPATA31C1P0DKV0 1188 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 CDC25BP30305 580 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 ATP2B2Q01814 1243 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 SETDB1Q15047 1291 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 EAPPQ56P03 285 aaPredicted RBP6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 FBXO11Q86XK2 927 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 TMEM151AQ8N4L1 468 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 FBF1Q8TES7 1133 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 SOX13Q9UN79 622 aa6.3□□□□□ -1.4
CKS1BP3-201ENST00000600888 A0A096LPE4 126 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 A0A1W2PPZ6 126 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 KRBA1A5PL33 1030 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 DEAF1O75398 565 aaPredicted RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms