RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 LPIN2Q92539 896 aa24.69■■□□□ 1.54
SHKBP1-222ENST00000600320 EYA3Q99504 573 aa24.69■■□□□ 1.54
SHKBP1-222ENST00000600320 GPR108Q9NPR9 543 aa24.69■■□□□ 1.54
SHKBP1-222ENST00000600320 PPIP5K2O43314 1243 aa24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 KIAA2012Q0VF49 1180 aa24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 WASHC4Q2M389 1173 aa24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 B4GALNT3Q6L9W6 998 aa24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 C15orf52Q6ZUT6 534 aaKnown RBP24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 EAF2Q96CJ1 260 aaPredicted RBP24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 LRRCC1Q9C099 1032 aa24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 AKAP2Q9Y2D5 859 aa24.68■■□□□ 1.54
SHKBP1-222ENST00000600320 SBF1O95248 1867 aa24.67■■□□□ 1.54
SHKBP1-222ENST00000600320 IFIT1P09914 478 aaKnown RBP24.67■■□□□ 1.54
SHKBP1-222ENST00000600320 SLC5A1P13866 664 aa24.67■■□□□ 1.54
SHKBP1-222ENST00000600320 YY1P25490 414 aa24.67■■□□□ 1.54
SHKBP1-222ENST00000600320 BCL11AQ9H165 835 aa24.67■■□□□ 1.54
SHKBP1-222ENST00000600320 PPP4R2Q9NY27 417 aa24.67■■□□□ 1.54
SHKBP1-222ENST00000600320 CCDC88AQ3V6T2 1871 aa24.66■■□□□ 1.54
SHKBP1-222ENST00000600320 KDM2BQ8NHM5 1336 aa24.66■■□□□ 1.54
SHKBP1-222ENST00000600320 GYG1P46976 350 aa24.66■■□□□ 1.54
SHKBP1-222ENST00000600320 ZC3H12CQ9C0D7 883 aaKnown RBP24.66■■□□□ 1.54
SHKBP1-222ENST00000600320 TLR7Q9NYK1 1049 aaKnown RBP24.66■■□□□ 1.54
SHKBP1-222ENST00000600320 ARAP2Q8WZ64 1704 aa24.66■■□□□ 1.54
SHKBP1-222ENST00000600320 DOK7Q18PE1 504 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 ANKRD45Q5TZF3 282 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 AACSQ86V21 672 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 LARGE2Q8N3Y3 721 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 XAGE2Q96GT9 111 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 CCDC136Q96JN2 1154 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 NEUROD6Q96NK8 337 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 DBNDD2Q9BQY9 259 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 CCDC8Q9H0W5 538 aaPredicted RBP24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 VPS33BQ9H267 617 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 UTRNP46939 3433 aa24.65■■□□□ 1.54
SHKBP1-222ENST00000600320 LMNB1P20700 586 aa24.64■■□□□ 1.54
SHKBP1-222ENST00000600320 CLASRPQ8N2M8 674 aaKnown RBP24.64■■□□□ 1.54
SHKBP1-222ENST00000600320 FAM84BQ96KN1 310 aaPredicted RBP24.64■■□□□ 1.54
SHKBP1-222ENST00000600320 BCAMP50895 628 aa24.63■■□□□ 1.53
SHKBP1-222ENST00000600320 FBXO33Q7Z6M2 555 aa24.63■■□□□ 1.53
SHKBP1-222ENST00000600320 DBNDD1Q9H9R9 158 aa24.63■■□□□ 1.53
SHKBP1-222ENST00000600320 DBNLQ9UJU6 430 aaKnown RBP24.63■■□□□ 1.53
SHKBP1-222ENST00000600320 C9orf131Q5VYM1 1079 aa24.62■■□□□ 1.53
SHKBP1-222ENST00000600320 RNF181Q9P0P0 153 aa24.62■■□□□ 1.53
SHKBP1-222ENST00000600320 PHKA1P46020 1223 aa24.61■■□□□ 1.53
SHKBP1-222ENST00000600320 C16orf71Q8IYS4 520 aaPredicted RBP24.61■■□□□ 1.53
SHKBP1-222ENST00000600320 CD209Q9NNX6 404 aa24.61■■□□□ 1.53
SHKBP1-222ENST00000600320 ECE2O60344 883 aa24.6■■□□□ 1.53
SHKBP1-222ENST00000600320 HIBADHP31937 336 aaKnown RBP24.6■■□□□ 1.53
SHKBP1-222ENST00000600320 NUCB1Q02818 461 aa24.6■■□□□ 1.53
SHKBP1-222ENST00000600320 NIM1KQ8IY84 436 aa24.6■■□□□ 1.53
SHKBP1-222ENST00000600320 LNPKQ9C0E8 428 aa24.6■■□□□ 1.53
SHKBP1-222ENST00000600320 COA1Q9GZY4 146 aa24.6■■□□□ 1.53
SHKBP1-222ENST00000600320 DICER1Q9UPY3 1922 aaKnown RBP24.6■■□□□ 1.53
SHKBP1-222ENST00000600320 YDJCA8MPS7 323 aa24.59■■□□□ 1.53
SHKBP1-222ENST00000600320 CAVIN4Q5BKX8 364 aa24.59■■□□□ 1.53
SHKBP1-222ENST00000600320 CCDC102BQ68D86 513 aa24.59■■□□□ 1.53
SHKBP1-222ENST00000600320 CENPQQ7L2Z9 268 aaPredicted RBP24.59■■□□□ 1.53
SHKBP1-222ENST00000600320 ZNF804AQ7Z570 1209 aa24.59■■□□□ 1.53
SHKBP1-222ENST00000600320 OTUD7AQ8TE49 926 aaPredicted RBP24.59■■□□□ 1.53
SHKBP1-222ENST00000600320 CHD4Q14839 1912 aa24.59■■□□□ 1.53
SHKBP1-222ENST00000600320 IFIT2P09913 472 aaKnown RBP24.58■■□□□ 1.53
SHKBP1-222ENST00000600320 CHD1LQ86WJ1 897 aa24.58■■□□□ 1.53
SHKBP1-222ENST00000600320 IQSEC3Q9UPP2 1182 aaPredicted RBP24.58■■□□□ 1.53
SHKBP1-222ENST00000600320 G3V3G9 751 aa24.57■■□□□ 1.52
SHKBP1-222ENST00000600320 DCAF8Q5TAQ9 597 aa24.57■■□□□ 1.52
SHKBP1-222ENST00000600320 TDRD7Q8NHU6 1098 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-222ENST00000600320 JDP2Q8WYK2 163 aa24.57■■□□□ 1.52
SHKBP1-222ENST00000600320 KCNQ5Q9NR82 932 aa24.57■■□□□ 1.52
SHKBP1-222ENST00000600320 ZNRF3Q9ULT6 936 aa24.57■■□□□ 1.52
SHKBP1-222ENST00000600320 GOLGB1Q14789 3259 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-222ENST00000600320 SCN9AQ15858 1988 aa24.56■■□□□ 1.52
SHKBP1-222ENST00000600320 TIAM2Q8IVF5 1701 aa24.56■■□□□ 1.52
SHKBP1-222ENST00000600320 IL1R1P14778 569 aa24.56■■□□□ 1.52
SHKBP1-222ENST00000600320 GORABQ5T7V8 394 aa24.56■■□□□ 1.52
SHKBP1-222ENST00000600320 VPS37DQ86XT2 251 aa24.56■■□□□ 1.52
SHKBP1-222ENST00000600320 FZD9O00144 591 aa24.55■■□□□ 1.52
SHKBP1-222ENST00000600320 ZBTB47Q9UFB7 747 aaPredicted RBP24.55■■□□□ 1.52
SHKBP1-222ENST00000600320 COL1A1P02452 1464 aaPredicted RBP24.55■■□□□ 1.52
SHKBP1-222ENST00000600320 SCARF1Q14162 830 aa24.54■■□□□ 1.52
SHKBP1-222ENST00000600320 PODNQ7Z5L7 613 aa24.54■■□□□ 1.52
SHKBP1-222ENST00000600320 SALL3Q9BXA9 1300 aa24.54■■□□□ 1.52
SHKBP1-222ENST00000600320 ZNF541Q9H0D2 1346 aa24.54■■□□□ 1.52
SHKBP1-222ENST00000600320 PDE4AP27815 886 aa24.53■■□□□ 1.52
SHKBP1-222ENST00000600320 JAG2Q9Y219 1238 aa24.53■■□□□ 1.52
SHKBP1-222ENST00000600320 GTF3C3Q9Y5Q9 886 aa24.53■■□□□ 1.52
SHKBP1-222ENST00000600320 RAD17O75943 681 aa24.52■■□□□ 1.52
SHKBP1-222ENST00000600320 ARID4AP29374 1257 aaPredicted RBP24.52■■□□□ 1.52
SHKBP1-222ENST00000600320 CXCL9Q07325 125 aa24.52■■□□□ 1.52
SHKBP1-222ENST00000600320 CCDC158Q5M9N0 1113 aa24.52■■□□□ 1.52
SHKBP1-222ENST00000600320 TTC39AQ5SRH9 613 aa24.52■■□□□ 1.52
SHKBP1-222ENST00000600320 TSHZ3Q63HK5 1081 aa24.52■■□□□ 1.52
SHKBP1-222ENST00000600320 ZNF646O15015 1829 aaPredicted RBP24.51■■□□□ 1.51
SHKBP1-222ENST00000600320 RASGRF1Q13972 1273 aa24.51■■□□□ 1.51
SHKBP1-222ENST00000600320 SKAP1Q86WV1 359 aa24.51■■□□□ 1.51
SHKBP1-222ENST00000600320 GNL3LQ9NVN8 582 aaKnown RBP24.51■■□□□ 1.51
SHKBP1-222ENST00000600320 UQCRFS1P1P0C7P4 283 aa24.5■■□□□ 1.51
SHKBP1-222ENST00000600320 MCAMP43121 646 aa24.5■■□□□ 1.51
SHKBP1-222ENST00000600320 GTF2IP78347 998 aa24.5■■□□□ 1.51
SHKBP1-222ENST00000600320 PI16Q6UXB8 463 aa24.5■■□□□ 1.51
SHKBP1-222ENST00000600320 ZNF512BQ96KM6 892 aaPredicted RBP24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms