RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PSME4Q14997 1843 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 AOC2O75106 756 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 CASP7P55210 303 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 RBM26Q5T8P6 1007 aaKnown RBP17.36■□□□□ 0.37
TRIM28-211ENST00000597968 STRIP1Q5VSL9 837 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 G2E3Q7L622 706 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 OGFOD1Q8N543 542 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 JARID2Q92833 1246 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-211ENST00000597968 MPHOSPH8Q99549 860 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 MYOZ2Q9NPC6 264 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 GGA3Q9NZ52 723 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 MYH3P11055 1940 aa17.36■□□□□ 0.37
TRIM28-211ENST00000597968 SAGE1Q9NXZ1 904 aa17.35■□□□□ 0.37
TRIM28-211ENST00000597968 SCN9AQ15858 1988 aa17.35■□□□□ 0.37
TRIM28-211ENST00000597968 ITGA6P23229 1130 aa17.34■□□□□ 0.37
TRIM28-211ENST00000597968 SCARF1Q14162 830 aa17.34■□□□□ 0.37
TRIM28-211ENST00000597968 ZNF804BA4D1E1 1349 aa17.33■□□□□ 0.36
TRIM28-211ENST00000597968 ADM5C9JUS6 153 aa17.33■□□□□ 0.36
TRIM28-211ENST00000597968 DACT2Q5SW24 774 aa17.33■□□□□ 0.36
TRIM28-211ENST00000597968 ANKRD18BA2A2Z9 1011 aa17.32■□□□□ 0.36
TRIM28-211ENST00000597968 FAM155AB1AL88 458 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-211ENST00000597968 ANGEL2Q5VTE6 544 aaKnown RBP17.32■□□□□ 0.36
TRIM28-211ENST00000597968 C15orf52Q6ZUT6 534 aaKnown RBP17.32■□□□□ 0.36
TRIM28-211ENST00000597968 ABHD8Q96I13 439 aa17.32■□□□□ 0.36
TRIM28-211ENST00000597968 ZNF157P51786 506 aaPredicted RBP17.31■□□□□ 0.36
TRIM28-211ENST00000597968 EXOSC9Q06265 439 aaKnown RBP17.31■□□□□ 0.36
TRIM28-211ENST00000597968 CDCA5Q96FF9 252 aa17.31■□□□□ 0.36
TRIM28-211ENST00000597968 SLC10A3P09131 477 aa17.3■□□□□ 0.36
TRIM28-211ENST00000597968 IFIT5Q13325 482 aaKnown RBP17.3■□□□□ 0.36
TRIM28-211ENST00000597968 FAM161AQ3B820 660 aa17.3■□□□□ 0.36
TRIM28-211ENST00000597968 BEND3Q5T5X7 828 aa17.3■□□□□ 0.36
TRIM28-211ENST00000597968 HDAC9Q9UKV0 1011 aa17.3■□□□□ 0.36
TRIM28-211ENST00000597968 CHRNDQ07001 517 aa17.29■□□□□ 0.36
TRIM28-211ENST00000597968 TTLL5Q6EMB2 1281 aa17.29■□□□□ 0.36
TRIM28-211ENST00000597968 ALDH1L1O75891 902 aa17.28■□□□□ 0.36
TRIM28-211ENST00000597968 KCNJ4P48050 445 aa17.28■□□□□ 0.36
TRIM28-211ENST00000597968 PAPPA2Q9BXP8 1791 aa17.28■□□□□ 0.36
TRIM28-211ENST00000597968 GRM8O00222 908 aa17.27■□□□□ 0.36
TRIM28-211ENST00000597968 WNT10BO00744 389 aa17.27■□□□□ 0.36
TRIM28-211ENST00000597968 NF2P35240 595 aa17.27■□□□□ 0.36
TRIM28-211ENST00000597968 FKBP1AP62942 108 aaKnown RBP17.27■□□□□ 0.36
TRIM28-211ENST00000597968 FOXO4P98177 505 aa17.27■□□□□ 0.36
TRIM28-211ENST00000597968 KIF23Q02241 960 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-211ENST00000597968 APOBEC3FQ8IUX4 373 aaKnown RBP17.27■□□□□ 0.36
TRIM28-211ENST00000597968 SALL2Q9Y467 1007 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-211ENST00000597968 ASTN2O75129 1339 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-211ENST00000597968 COL1A1P02452 1464 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-211ENST00000597968 CCDC57Q2TAC2 916 aa17.26■□□□□ 0.35
TRIM28-211ENST00000597968 DLK2Q6UY11 383 aa17.26■□□□□ 0.35
TRIM28-211ENST00000597968 TXNRD3Q86VQ6 643 aa17.26■□□□□ 0.35
TRIM28-211ENST00000597968 MTMR14Q8NCE2 650 aa17.26■□□□□ 0.35
TRIM28-211ENST00000597968 CD209Q9NNX6 404 aa17.26■□□□□ 0.35
TRIM28-211ENST00000597968 POLR2AP24928 1970 aaKnown RBP17.26■□□□□ 0.35
TRIM28-211ENST00000597968 WTIPA6NIX2 430 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-211ENST00000597968 NBPF9Q3BBW0 867 aa17.25■□□□□ 0.35
TRIM28-211ENST00000597968 ZNF804AQ7Z570 1209 aa17.25■□□□□ 0.35
TRIM28-211ENST00000597968 ZBED3Q96IU2 234 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-211ENST00000597968 ZIC5Q96T25 663 aa17.25■□□□□ 0.35
TRIM28-211ENST00000597968 IRS2Q9Y4H2 1338 aa17.24■□□□□ 0.35
TRIM28-211ENST00000597968 IL1R1P14778 569 aa17.24■□□□□ 0.35
TRIM28-211ENST00000597968 RGS19P49795 217 aa17.24■□□□□ 0.35
TRIM28-211ENST00000597968 RASAL3Q86YV0 1011 aa17.24■□□□□ 0.35
TRIM28-211ENST00000597968 CSRNP1Q96S65 589 aa17.24■□□□□ 0.35
TRIM28-211ENST00000597968 SRCIN1Q9C0H9 1055 aa17.24■□□□□ 0.35
TRIM28-211ENST00000597968 C9orf78Q9NZ63 289 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-211ENST00000597968 TSKSQ9UJT2 592 aa17.24■□□□□ 0.35
TRIM28-211ENST00000597968 UNCXA6NJT0 531 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 F6X3S4 739 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 GTF2IP78347 998 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 LMBR1LQ6UX01 489 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 LDHAL6AQ6ZMR3 332 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 FBXW7Q969H0 707 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 SPINK5Q9NQ38 1064 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-211ENST00000597968 RNF186Q9NXI6 227 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 PPP2R3BQ9Y5P8 575 aa17.23■□□□□ 0.35
TRIM28-211ENST00000597968 ZNF646O15015 1829 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-211ENST00000597968 ZNF521Q96K83 1311 aa17.22■□□□□ 0.35
TRIM28-211ENST00000597968 SPEF2Q9C093 1822 aa17.22■□□□□ 0.35
TRIM28-211ENST00000597968 TAF7LQ5H9L4 462 aa17.22■□□□□ 0.35
TRIM28-211ENST00000597968 FAM9BQ8IZU0 186 aa17.22■□□□□ 0.35
TRIM28-211ENST00000597968 MCOLN1Q9GZU1 580 aa17.22■□□□□ 0.35
TRIM28-211ENST00000597968 UTYO14607 1347 aa17.21■□□□□ 0.35
TRIM28-211ENST00000597968 UBE4AQ14139 1066 aa17.21■□□□□ 0.35
TRIM28-211ENST00000597968 NOM1Q5C9Z4 860 aaKnown RBP17.21■□□□□ 0.35
TRIM28-211ENST00000597968 ARMC9Q7Z3E5 817 aa17.21■□□□□ 0.35
TRIM28-211ENST00000597968 KIAA0825Q8IV33 1275 aa17.21■□□□□ 0.35
TRIM28-211ENST00000597968 CHMP3Q9Y3E7 222 aa17.21■□□□□ 0.35
TRIM28-211ENST00000597968 PTPRCP08575 1304 aa17.21■□□□□ 0.34
TRIM28-211ENST00000597968 MYO1BO43795 1136 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 TRPA1O75762 1119 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 SASH1O94885 1247 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 KLRK1P26718 216 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 DGKZQ13574 1117 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 DLGAP5Q15398 846 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 MXD3Q9BW11 206 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 CNNM1Q9NRU3 951 aa17.2■□□□□ 0.34
TRIM28-211ENST00000597968 CCDC85CA6NKD9 419 aa17.19■□□□□ 0.34
TRIM28-211ENST00000597968 TAF5LO75529 589 aa17.19■□□□□ 0.34
TRIM28-211ENST00000597968 TM4SF4P48230 202 aa17.19■□□□□ 0.34
TRIM28-211ENST00000597968 E9PSI1 815 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 847.8 ms