RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 TSHZ3Q63HK5 1081 aa19.74■□□□□ 0.75
SS18-211ENST00000578954 ANKIB1Q9P2G1 1089 aa19.73■□□□□ 0.75
SS18-211ENST00000578954 GRIPAP1Q4V328 841 aa19.72■□□□□ 0.75
SS18-211ENST00000578954 CCDC158Q5M9N0 1113 aa19.72■□□□□ 0.75
SS18-211ENST00000578954 PIM2Q9P1W9 311 aa19.72■□□□□ 0.75
SS18-211ENST00000578954 GGA1Q9UJY5 639 aa19.72■□□□□ 0.75
SS18-211ENST00000578954 WTIPA6NIX2 430 aaPredicted RBP19.71■□□□□ 0.75
SS18-211ENST00000578954 ARID4AP29374 1257 aaPredicted RBP19.71■□□□□ 0.75
SS18-211ENST00000578954 KCNJ4P48050 445 aa19.71■□□□□ 0.75
SS18-211ENST00000578954 CCDC102BQ68D86 513 aa19.71■□□□□ 0.75
SS18-211ENST00000578954 MPNDQ8N594 471 aa19.71■□□□□ 0.75
SS18-211ENST00000578954 TBC1D16Q8TBP0 767 aa19.71■□□□□ 0.75
SS18-211ENST00000578954 NSFL1CQ9UNZ2 370 aaKnown RBP19.71■□□□□ 0.75
SS18-211ENST00000578954 MED23Q9ULK4 1368 aa19.7■□□□□ 0.74
SS18-211ENST00000578954 UFL1O94874 794 aa19.7■□□□□ 0.74
SS18-211ENST00000578954 UQCRFS1P1P0C7P4 283 aa19.7■□□□□ 0.74
SS18-211ENST00000578954 PHKA1P46020 1223 aa19.7■□□□□ 0.74
SS18-211ENST00000578954 GORABQ5T7V8 394 aa19.7■□□□□ 0.74
SS18-211ENST00000578954 FBXO33Q7Z6M2 555 aa19.7■□□□□ 0.74
SS18-211ENST00000578954 RTFDC1Q9BY42 306 aaPredicted RBP19.7■□□□□ 0.74
SS18-211ENST00000578954 TMX4Q9H1E5 349 aaPredicted RBP19.7■□□□□ 0.74
SS18-211ENST00000578954 POLLQ9UGP5 575 aa19.7■□□□□ 0.74
SS18-211ENST00000578954 KLRK1P26718 216 aa19.69■□□□□ 0.74
SS18-211ENST00000578954 TTC39AQ5SRH9 613 aa19.69■□□□□ 0.74
SS18-211ENST00000578954 OLFM4Q6UX06 510 aa19.69■□□□□ 0.74
SS18-211ENST00000578954 FAM84BQ96KN1 310 aaPredicted RBP19.69■□□□□ 0.74
SS18-211ENST00000578954 HAUS7Q99871 368 aa19.69■□□□□ 0.74
SS18-211ENST00000578954 AKAP11Q9UKA4 1901 aa19.68■□□□□ 0.74
SS18-211ENST00000578954 DALRD3Q5D0E6 543 aaKnown RBP19.68■□□□□ 0.74
SS18-211ENST00000578954 SOGA3Q5TF21 947 aa19.68■□□□□ 0.74
SS18-211ENST00000578954 DPP8Q6V1X1 898 aaPredicted RBP19.68■□□□□ 0.74
SS18-211ENST00000578954 PELP1Q8IZL8 1130 aaKnown RBP19.68■□□□□ 0.74
SS18-211ENST00000578954 BOLA2Q9H3K6 86 aa19.68■□□□□ 0.74
SS18-211ENST00000578954 PPP1R1BQ9UD71 204 aaPredicted RBP19.68■□□□□ 0.74
SS18-211ENST00000578954 SDSP20132 328 aa19.67■□□□□ 0.74
SS18-211ENST00000578954 BCAMP50895 628 aa19.67■□□□□ 0.74
SS18-211ENST00000578954 CCDC93Q567U6 631 aa19.67■□□□□ 0.74
SS18-211ENST00000578954 CAVIN4Q5BKX8 364 aa19.67■□□□□ 0.74
SS18-211ENST00000578954 TXNRD3Q86VQ6 643 aa19.67■□□□□ 0.74
SS18-211ENST00000578954 NLGN2Q8NFZ4 835 aa19.67■□□□□ 0.74
SS18-211ENST00000578954 SEMA3EO15041 775 aa19.66■□□□□ 0.74
SS18-211ENST00000578954 C21orf2O43822 256 aa19.66■□□□□ 0.74
SS18-211ENST00000578954 MCAMP43121 646 aa19.66■□□□□ 0.74
SS18-211ENST00000578954 GYG1P46976 350 aa19.66■□□□□ 0.74
SS18-211ENST00000578954 SCARF1Q14162 830 aa19.66■□□□□ 0.74
SS18-211ENST00000578954 KLHL34Q8N239 644 aa19.66■□□□□ 0.74
SS18-211ENST00000578954 FHDC1Q9C0D6 1143 aaPredicted RBP19.66■□□□□ 0.74
SS18-211ENST00000578954 PDS5AQ29RF7 1337 aaKnown RBP19.66■□□□□ 0.74
SS18-211ENST00000578954 ARFGEF1Q9Y6D6 1849 aa19.65■□□□□ 0.74
SS18-211ENST00000578954 HIBADHP31937 336 aaKnown RBP19.65■□□□□ 0.74
SS18-211ENST00000578954 TICAM2Q86XR7 235 aa19.65■□□□□ 0.74
SS18-211ENST00000578954 RTKN2Q8IZC4 609 aa19.65■□□□□ 0.74
SS18-211ENST00000578954 CNTROBQ8N137 903 aa19.65■□□□□ 0.74
SS18-211ENST00000578954 EVI5LQ96CN4 794 aa19.65■□□□□ 0.74
SS18-211ENST00000578954 PSMD1Q99460 953 aa19.65■□□□□ 0.74
SS18-211ENST00000578954 GNL3LQ9NVN8 582 aaKnown RBP19.65■□□□□ 0.74
SS18-211ENST00000578954 C6orf229H3BNL8 230 aa19.64■□□□□ 0.73
SS18-211ENST00000578954 RASGRF1Q13972 1273 aa19.64■□□□□ 0.73
SS18-211ENST00000578954 ZNF804AQ7Z570 1209 aa19.64■□□□□ 0.73
SS18-211ENST00000578954 SUPT20HQ8NEM7 779 aa19.64■□□□□ 0.73
SS18-211ENST00000578954 EYA3Q99504 573 aa19.64■□□□□ 0.73
SS18-211ENST00000578954 HMG20BQ9P0W2 317 aa19.64■□□□□ 0.73
SS18-211ENST00000578954 RFX7Q2KHR2 1363 aa19.64■□□□□ 0.73
SS18-211ENST00000578954 COL1A1P02452 1464 aaPredicted RBP19.64■□□□□ 0.73
SS18-211ENST00000578954 C8orf34Q49A92 452 aa19.63■□□□□ 0.73
SS18-211ENST00000578954 TDRD7Q8NHU6 1098 aaKnown RBP19.63■□□□□ 0.73
SS18-211ENST00000578954 GPR101Q96P66 508 aaPredicted RBP19.63■□□□□ 0.73
SS18-211ENST00000578954 PAG1Q9NWQ8 432 aa19.63■□□□□ 0.73
SS18-211ENST00000578954 AK9Q5TCS8 1911 aa19.63■□□□□ 0.73
SS18-211ENST00000578954 FER1L6Q2WGJ9 1857 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 TRIM6-TRIM34B2RNG4 842 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 IL1R1P14778 569 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 ZAP70P43403 619 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 VPS37DQ86XT2 251 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 SPATA5Q8NB90 893 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 DNAJC2Q99543 621 aaKnown RBP19.62■□□□□ 0.73
SS18-211ENST00000578954 SYT17Q9BSW7 474 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 ZNF219Q9P2Y4 722 aaPredicted RBP19.62■□□□□ 0.73
SS18-211ENST00000578954 DENND2AQ9ULE3 1009 aa19.62■□□□□ 0.73
SS18-211ENST00000578954 CDC45O75419 566 aa19.61■□□□□ 0.73
SS18-211ENST00000578954 MAP4K4O95819 1239 aaPredicted RBP19.61■□□□□ 0.73
SS18-211ENST00000578954 PI16Q6UXB8 463 aa19.61■□□□□ 0.73
SS18-211ENST00000578954 COA1Q9GZY4 146 aa19.61■□□□□ 0.73
SS18-211ENST00000578954 VPS33BQ9H267 617 aa19.61■□□□□ 0.73
SS18-211ENST00000578954 CD209Q9NNX6 404 aa19.61■□□□□ 0.73
SS18-211ENST00000578954 LTBP3Q9NS15 1303 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 FKBP4Q02790 459 aaKnown RBP eCLIP19.6■□□□□ 0.73
SS18-211ENST00000578954 KIAA2012Q0VF49 1180 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 WASHC4Q2M389 1173 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 KBTBD3Q8NAB2 608 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 RILPL2Q969X0 211 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 EDC3Q96F86 508 aaKnown RBP19.6■□□□□ 0.73
SS18-211ENST00000578954 ZC3H12CQ9C0D7 883 aaKnown RBP19.6■□□□□ 0.73
SS18-211ENST00000578954 NDUFB9Q9Y6M9 179 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 MYH13Q9UKX3 1938 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 DOCK2Q92608 1830 aa19.6■□□□□ 0.73
SS18-211ENST00000578954 GOLIM4O00461 696 aa19.59■□□□□ 0.73
SS18-211ENST00000578954 CYP2E1P05181 493 aaPredicted RBP19.59■□□□□ 0.73
SS18-211ENST00000578954 TTF1Q15361 905 aaPredicted RBP19.59■□□□□ 0.73
SS18-211ENST00000578954 SNRKQ9NRH2 765 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms