RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 USP17L1Q7RTZ2 530 aa22.08■■□□□ 1.13
SMG6-214ENST00000573827 COA1Q9GZY4 146 aa22.08■■□□□ 1.13
SMG6-214ENST00000573827 C9orf78Q9NZ63 289 aaPredicted RBP22.08■■□□□ 1.13
SMG6-214ENST00000573827 TLL2Q9Y6L7 1015 aa22.08■■□□□ 1.13
SMG6-214ENST00000573827 ASTN2O75129 1339 aaPredicted RBP22.07■■□□□ 1.12
SMG6-214ENST00000573827 THSD7BQ9C0I4 1608 aa22.07■■□□□ 1.12
SMG6-214ENST00000573827 ALDH1L2Q3SY69 923 aa22.07■■□□□ 1.12
SMG6-214ENST00000573827 C15orf52Q6ZUT6 534 aaKnown RBP22.07■■□□□ 1.12
SMG6-214ENST00000573827 ZNF594Q96JF6 807 aaPredicted RBP22.07■■□□□ 1.12
SMG6-214ENST00000573827 MXD3Q9BW11 206 aa22.07■■□□□ 1.12
SMG6-214ENST00000573827 G3V3G9 751 aa22.06■■□□□ 1.12
SMG6-214ENST00000573827 CELF2O95319 508 aaKnown RBP22.06■■□□□ 1.12
SMG6-214ENST00000573827 KIF4BQ2VIQ3 1234 aa22.06■■□□□ 1.12
SMG6-214ENST00000573827 RABL6Q3YEC7 729 aaPredicted RBP22.06■■□□□ 1.12
SMG6-214ENST00000573827 DCAF8Q5TAQ9 597 aa22.06■■□□□ 1.12
SMG6-214ENST00000573827 COL13A1Q5TAT6 717 aaPredicted RBP22.06■■□□□ 1.12
SMG6-214ENST00000573827 ANKRD44Q8N8A2 993 aa22.06■■□□□ 1.12
SMG6-214ENST00000573827 ABT1Q9ULW3 272 aaKnown RBP22.06■■□□□ 1.12
SMG6-214ENST00000573827 TAF5LO75529 589 aa22.05■■□□□ 1.12
SMG6-214ENST00000573827 RBM26Q5T8P6 1007 aaKnown RBP22.05■■□□□ 1.12
SMG6-214ENST00000573827 IFFO2Q5TF58 517 aa22.05■■□□□ 1.12
SMG6-214ENST00000573827 STRIP1Q5VSL9 837 aa22.05■■□□□ 1.12
SMG6-214ENST00000573827 SAPCD2Q86UD0 394 aa22.05■■□□□ 1.12
SMG6-214ENST00000573827 USP48Q86UV5 1035 aa22.05■■□□□ 1.12
SMG6-214ENST00000573827 HELBQ8NG08 1087 aaPredicted RBP22.05■■□□□ 1.12
SMG6-214ENST00000573827 WDR33Q9C0J8 1336 aaKnown RBP22.05■■□□□ 1.12
SMG6-214ENST00000573827 USP17L8P0C7I0 530 aa22.04■■□□□ 1.12
SMG6-214ENST00000573827 USP44Q9H0E7 712 aa22.04■■□□□ 1.12
SMG6-214ENST00000573827 CHMP3Q9Y3E7 222 aa22.04■■□□□ 1.12
SMG6-214ENST00000573827 CT47B1P0C2W7 299 aaPredicted RBP22.03■■□□□ 1.12
SMG6-214ENST00000573827 BRPF1P55201 1214 aaPredicted RBP22.03■■□□□ 1.12
SMG6-214ENST00000573827 BICC1Q9H694 974 aaKnown RBP22.03■■□□□ 1.12
SMG6-214ENST00000573827 WBP1LQ9NX94 342 aa22.03■■□□□ 1.12
SMG6-214ENST00000573827 ADM5C9JUS6 153 aa22.02■■□□□ 1.12
SMG6-214ENST00000573827 CCDC57Q2TAC2 916 aa22.02■■□□□ 1.12
SMG6-214ENST00000573827 KRT26Q7Z3Y9 468 aa22.02■■□□□ 1.12
SMG6-214ENST00000573827 PUS3Q9BZE2 481 aaKnown RBP22.02■■□□□ 1.12
SMG6-214ENST00000573827 CD209Q9NNX6 404 aa22.02■■□□□ 1.12
SMG6-214ENST00000573827 MYOZ2Q9NPC6 264 aa22.02■■□□□ 1.12
SMG6-214ENST00000573827 GGA3Q9NZ52 723 aa22.02■■□□□ 1.12
SMG6-214ENST00000573827 FOXN1O15353 648 aa22.01■■□□□ 1.11
SMG6-214ENST00000573827 CYP4F22Q6NT55 531 aa22.01■■□□□ 1.11
SMG6-214ENST00000573827 LDHAL6AQ6ZMR3 332 aa22.01■■□□□ 1.11
SMG6-214ENST00000573827 HHIPL1Q96JK4 782 aa22.01■■□□□ 1.11
SMG6-214ENST00000573827 CAPNS2Q96L46 248 aa22.01■■□□□ 1.11
SMG6-214ENST00000573827 SCARF1Q14162 830 aa22■■□□□ 1.11
SMG6-214ENST00000573827 SMC4Q9NTJ3 1288 aa22■■□□□ 1.11
SMG6-214ENST00000573827 RIPOR2Q9Y4F9 1068 aa22■■□□□ 1.11
SMG6-214ENST00000573827 IL1R1P14778 569 aa21.99■■□□□ 1.11
SMG6-214ENST00000573827 MIER1Q8N108 512 aa21.99■■□□□ 1.11
SMG6-214ENST00000573827 CERS5Q8N5B7 392 aa21.99■■□□□ 1.11
SMG6-214ENST00000573827 ZBED3Q96IU2 234 aaPredicted RBP21.99■■□□□ 1.11
SMG6-214ENST00000573827 MYO3BQ8WXR4 1341 aa21.99■■□□□ 1.11
SMG6-214ENST00000573827 KCNJ4P48050 445 aa21.98■■□□□ 1.11
SMG6-214ENST00000573827 ANGEL2Q5VTE6 544 aaKnown RBP21.98■■□□□ 1.11
SMG6-214ENST00000573827 TTLL5Q6EMB2 1281 aa21.98■■□□□ 1.11
SMG6-214ENST00000573827 DCPSQ96C86 337 aaKnown RBP21.98■■□□□ 1.11
SMG6-214ENST00000573827 RARSP54136 660 aaKnown RBP21.97■■□□□ 1.11
SMG6-214ENST00000573827 GTF2IP78347 998 aa21.97■■□□□ 1.11
SMG6-214ENST00000573827 NBPF9Q3BBW0 867 aa21.97■■□□□ 1.11
SMG6-214ENST00000573827 ZNF408Q9H9D4 720 aa21.97■■□□□ 1.11
SMG6-214ENST00000573827 CNNM1Q9NRU3 951 aa21.97■■□□□ 1.11
SMG6-214ENST00000573827 PITPNM2Q9BZ72 1349 aa21.97■■□□□ 1.11
SMG6-214ENST00000573827 NOB1Q9ULX3 412 aaKnown RBP21.96■■□□□ 1.11
SMG6-214ENST00000573827 WNT10BO00744 389 aa21.95■■□□□ 1.1
SMG6-214ENST00000573827 AOC2O75106 756 aa21.95■■□□□ 1.1
SMG6-214ENST00000573827 ECE1P42892 770 aa21.95■■□□□ 1.1
SMG6-214ENST00000573827 RFX5P48382 616 aaPredicted RBP21.95■■□□□ 1.1
SMG6-214ENST00000573827 TAF7LQ5H9L4 462 aa21.95■■□□□ 1.1
SMG6-214ENST00000573827 VGLL2Q8N8G2 317 aa21.95■■□□□ 1.1
SMG6-214ENST00000573827 CDCA5Q96FF9 252 aa21.95■■□□□ 1.1
SMG6-214ENST00000573827 MMP14P50281 582 aa21.94■■□□□ 1.1
SMG6-214ENST00000573827 UBE4AQ14139 1066 aa21.94■■□□□ 1.1
SMG6-214ENST00000573827 LRRC24Q50LG9 513 aa21.94■■□□□ 1.1
SMG6-214ENST00000573827 SULF1Q8IWU6 871 aa21.94■■□□□ 1.1
SMG6-214ENST00000573827 GBA2Q9HCG7 927 aaPredicted RBP21.94■■□□□ 1.1
SMG6-214ENST00000573827 PLIN1O60240 522 aa21.93■■□□□ 1.1
SMG6-214ENST00000573827 KIAA0825Q8IV33 1275 aa21.93■■□□□ 1.1
SMG6-214ENST00000573827 KLHDC4Q8TBB5 520 aa21.93■■□□□ 1.1
SMG6-214ENST00000573827 FBXW7Q969H0 707 aa21.93■■□□□ 1.1
SMG6-214ENST00000573827 FAM84BQ96KN1 310 aaPredicted RBP21.93■■□□□ 1.1
SMG6-214ENST00000573827 SCAF8Q9UPN6 1271 aaKnown RBP21.93■■□□□ 1.1
SMG6-214ENST00000573827 FAM205AQ6ZU69 1335 aa21.92■■□□□ 1.1
SMG6-214ENST00000573827 MROH5Q6ZUA9 1318 aa21.92■■□□□ 1.1
SMG6-214ENST00000573827 MAP2K2P36507 400 aa21.92■■□□□ 1.1
SMG6-214ENST00000573827 HUNKP57058 714 aa21.92■■□□□ 1.1
SMG6-214ENST00000573827 FKBP1AP62942 108 aaKnown RBP21.92■■□□□ 1.1
SMG6-214ENST00000573827 MAP2K1Q02750 393 aaPredicted RBP21.92■■□□□ 1.1
SMG6-214ENST00000573827 DIEXFQ68CQ4 756 aaKnown RBP21.92■■□□□ 1.1
SMG6-214ENST00000573827 ZNF804AQ7Z570 1209 aa21.92■■□□□ 1.1
SMG6-214ENST00000573827 TDRD7Q8NHU6 1098 aaKnown RBP21.92■■□□□ 1.1
SMG6-214ENST00000573827 ZIC5Q96T25 663 aa21.92■■□□□ 1.1
SMG6-214ENST00000573827 FAM155AB1AL88 458 aaPredicted RBP21.91■■□□□ 1.1
SMG6-214ENST00000573827 SASH1O94885 1247 aa21.91■■□□□ 1.1
SMG6-214ENST00000573827 HSPA8P11142 646 aaKnown RBP21.91■■□□□ 1.1
SMG6-214ENST00000573827 CTCFP49711 727 aaPredicted RBP21.91■■□□□ 1.1
SMG6-214ENST00000573827 PAXIP1Q6ZW49 1069 aaPredicted RBP21.91■■□□□ 1.1
SMG6-214ENST00000573827 OGFOD1Q8N543 542 aa21.91■■□□□ 1.1
SMG6-214ENST00000573827 PRDM10Q9NQV6 1147 aa21.91■■□□□ 1.1
SMG6-214ENST00000573827 GYG1P46976 350 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms