RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PELP1Q8IZL8 1130 aaKnown RBP11.51□□□□□ -0.57
VPS35-211ENST00000569950 FAM84BQ96KN1 310 aaPredicted RBP11.51□□□□□ -0.57
VPS35-211ENST00000569950 GPR108Q9NPR9 543 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 ANKIB1Q9P2G1 1089 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 GGA1Q9UJY5 639 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 FPGT-TNNI3KV9GXZ4 949 aa11.51□□□□□ -0.57
VPS35-211ENST00000569950 A0A1B0GUL7 405 aa11.5□□□□□ -0.57
VPS35-211ENST00000569950 SMARCA5O60264 1052 aaPredicted RBP11.5□□□□□ -0.57
VPS35-211ENST00000569950 IARSP41252 1262 aaKnown RBP11.5□□□□□ -0.57
VPS35-211ENST00000569950 TIMM10P62072 90 aa11.5□□□□□ -0.57
VPS35-211ENST00000569950 G3BP1Q13283 466 aaKnown RBP eCLIP11.5□□□□□ -0.571e-8■■■■■ 27.2
VPS35-211ENST00000569950 PUM3Q15397 648 aaKnown RBP11.5□□□□□ -0.57
VPS35-211ENST00000569950 ATP2B3Q16720 1220 aa11.5□□□□□ -0.57
VPS35-211ENST00000569950 FBXO33Q7Z6M2 555 aa11.5□□□□□ -0.57
VPS35-211ENST00000569950 IL1RAPL2Q9NP60 686 aa11.5□□□□□ -0.57
VPS35-211ENST00000569950 KCNQ5Q9NR82 932 aa11.5□□□□□ -0.57
VPS35-211ENST00000569950 CEP126Q9P2H0 1117 aa11.5□□□□□ -0.57
VPS35-211ENST00000569950 DBNLQ9UJU6 430 aaKnown RBP11.5□□□□□ -0.57
VPS35-211ENST00000569950 DOCK2Q92608 1830 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 ZBTB22O15209 634 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 GRIN3BO60391 1043 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 RAB11FIP3O75154 756 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 GYG1P46976 350 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 ERICH6BQ5W0A0 696 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 OTUD7AQ8TE49 926 aaPredicted RBP11.49□□□□□ -0.57
VPS35-211ENST00000569950 LPIN2Q92539 896 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 KIF1BPQ96EK5 621 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 DBNDD2Q9BQY9 259 aa11.49□□□□□ -0.57
VPS35-211ENST00000569950 C6orf229H3BNL8 230 aa11.48□□□□□ -0.57
VPS35-211ENST00000569950 APBB1O00213 710 aa11.48□□□□□ -0.57
VPS35-211ENST00000569950 RIMBP2O15034 1052 aa11.48□□□□□ -0.57
VPS35-211ENST00000569950 LMNB1P20700 586 aa11.48□□□□□ -0.57
VPS35-211ENST00000569950 C16orf71Q8IYS4 520 aaPredicted RBP11.48□□□□□ -0.57
VPS35-211ENST00000569950 XAGE2Q96GT9 111 aa11.48□□□□□ -0.57
VPS35-211ENST00000569950 VPS33BQ9H267 617 aa11.48□□□□□ -0.57
VPS35-211ENST00000569950 RWDD1Q9H446 243 aaPredicted RBP11.48□□□□□ -0.57
VPS35-211ENST00000569950 ADAMTSL1Q8N6G6 1762 aa11.48□□□□□ -0.57
VPS35-211ENST00000569950 ZNF541Q9H0D2 1346 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 FZD9O00144 591 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 PPIP5K2O43314 1243 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 IL1R1P14778 569 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 PDE4AP27815 886 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 PHKA1P46020 1223 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 BCAMP50895 628 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 NUCB1Q02818 461 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 SCARF1Q14162 830 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 DOK7Q18PE1 504 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 WASHC4Q2M389 1173 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 HSP90AB4PQ58FF6 505 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 C9orf131Q5VYM1 1079 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 ERC1Q8IUD2 1116 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 SUPT20HQ8NEM7 779 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 TDRD7Q8NHU6 1098 aaKnown RBP11.47□□□□□ -0.57
VPS35-211ENST00000569950 GCC1Q96CN9 775 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 LRRCC1Q9C099 1032 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 CCDC8Q9H0W5 538 aaPredicted RBP11.47□□□□□ -0.57
VPS35-211ENST00000569950 DBNDD1Q9H9R9 158 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 CD209Q9NNX6 404 aa11.47□□□□□ -0.57
VPS35-211ENST00000569950 ECE2O60344 883 aa11.46□□□□□ -0.57
VPS35-211ENST00000569950 CACNB1Q02641 598 aaPredicted RBP11.46□□□□□ -0.57
VPS35-211ENST00000569950 OS9Q13438 667 aaPredicted RBP11.46□□□□□ -0.57
VPS35-211ENST00000569950 B4GALNT3Q6L9W6 998 aa11.46□□□□□ -0.57
VPS35-211ENST00000569950 SKAP1Q86WV1 359 aa11.46□□□□□ -0.57
VPS35-211ENST00000569950 NEFLP07196 543 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 SLC5A1P13866 664 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 ARID4AP29374 1257 aaPredicted RBP11.45□□□□□ -0.58
VPS35-211ENST00000569950 CCDC102BQ68D86 513 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 PI16Q6UXB8 463 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 AACSQ86V21 672 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 LARGE2Q8N3Y3 721 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 CERS5Q8N5B7 392 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 EYA3Q99504 573 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 ZC3H12CQ9C0D7 883 aaKnown RBP11.45□□□□□ -0.58
VPS35-211ENST00000569950 PPP4R2Q9NY27 417 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 RNF181Q9P0P0 153 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 AKAP2Q9Y2D5 859 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 WDR90Q96KV7 1748 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 MYH7P12883 1935 aa11.45□□□□□ -0.58
VPS35-211ENST00000569950 FAM205AQ6ZU69 1335 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 IFIT1P09914 478 aaKnown RBP11.44□□□□□ -0.58
VPS35-211ENST00000569950 HIBADHP31937 336 aaKnown RBP11.44□□□□□ -0.58
VPS35-211ENST00000569950 MCAMP43121 646 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 KCNJ4P48050 445 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 CXCL9Q07325 125 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 RASGRF1Q13972 1273 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 GRIK5Q16478 980 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 DACT2Q5SW24 774 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 ZNF512BQ96KM6 892 aaPredicted RBP11.44□□□□□ -0.58
VPS35-211ENST00000569950 GMLQ99445 158 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 COA1Q9GZY4 146 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 ZNRF3Q9ULT6 936 aa11.44□□□□□ -0.58
VPS35-211ENST00000569950 IQSEC3Q9UPP2 1182 aaPredicted RBP11.44□□□□□ -0.58
VPS35-211ENST00000569950 ANKRD45Q5TZF3 282 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 PODNQ7Z5L7 613 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 CHD1LQ86WJ1 897 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 PI4K2BQ8TCG2 481 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 NEUROD6Q96NK8 337 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 MXD3Q9BW11 206 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 LNPKQ9C0E8 428 aa11.43□□□□□ -0.58
VPS35-211ENST00000569950 TMX4Q9H1E5 349 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms