RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ZNF609O15014 1411 aa21.24■□□□□ 0.99
CLK3-210ENST00000563112 USP17L8P0C7I0 530 aa21.24■□□□□ 0.99
CLK3-210ENST00000563112 LDHAL6AQ6ZMR3 332 aa21.24■□□□□ 0.99
CLK3-210ENST00000563112 PAXIP1Q6ZW49 1069 aaPredicted RBP21.24■□□□□ 0.99
CLK3-210ENST00000563112 USP48Q86UV5 1035 aa21.24■□□□□ 0.99
CLK3-210ENST00000563112 CNNM1Q9NRU3 951 aa21.24■□□□□ 0.99
CLK3-210ENST00000563112 PCNTO95613 3336 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 EGFRP00533 1210 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 NBPF7P0C2Y1 421 aaPredicted RBP21.23■□□□□ 0.99
CLK3-210ENST00000563112 ECE1P42892 770 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 ZNF280AP59817 542 aaPredicted RBP21.23■□□□□ 0.99
CLK3-210ENST00000563112 STRIP1Q5VSL9 837 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 KRT26Q7Z3Y9 468 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 TXNRD3Q86VQ6 643 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 HELBQ8NG08 1087 aaPredicted RBP21.23■□□□□ 0.99
CLK3-210ENST00000563112 SUCLG2Q96I99 432 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 ZNF408Q9H9D4 720 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 TLL2Q9Y6L7 1015 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 UTYO14607 1347 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 MYO3BQ8WXR4 1341 aa21.23■□□□□ 0.99
CLK3-210ENST00000563112 TAF5LO75529 589 aa21.22■□□□□ 0.99
CLK3-210ENST00000563112 ZNF594Q96JF6 807 aaPredicted RBP21.22■□□□□ 0.99
CLK3-210ENST00000563112 GMLQ99445 158 aa21.22■□□□□ 0.99
CLK3-210ENST00000563112 WDR33Q9C0J8 1336 aaKnown RBP21.22■□□□□ 0.99
CLK3-210ENST00000563112 DACT2Q5SW24 774 aa21.21■□□□□ 0.99
CLK3-210ENST00000563112 TTLL5Q6EMB2 1281 aa21.21■□□□□ 0.99
CLK3-210ENST00000563112 OGFOD1Q8N543 542 aa21.21■□□□□ 0.99
CLK3-210ENST00000563112 AIDAQ96BJ3 306 aa21.21■□□□□ 0.99
CLK3-210ENST00000563112 MYOZ2Q9NPC6 264 aa21.21■□□□□ 0.99
CLK3-210ENST00000563112 POLR2AP24928 1970 aaKnown RBP21.2■□□□□ 0.98
CLK3-210ENST00000563112 PLIN1O60240 522 aa21.2■□□□□ 0.98
CLK3-210ENST00000563112 KLRK1P26718 216 aa21.2■□□□□ 0.98
CLK3-210ENST00000563112 C15orf52Q6ZUT6 534 aaKnown RBP21.2■□□□□ 0.98
CLK3-210ENST00000563112 SULF1Q8IWU6 871 aa21.2■□□□□ 0.98
CLK3-210ENST00000563112 CAPNS2Q96L46 248 aa21.2■□□□□ 0.98
CLK3-210ENST00000563112 MMP14P50281 582 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 GRM1Q13255 1194 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 SCARF1Q14162 830 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 IFFO2Q5TF58 517 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 DIEXFQ68CQ4 756 aaKnown RBP21.19■□□□□ 0.98
CLK3-210ENST00000563112 ZNF804AQ7Z570 1209 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 SAPCD2Q86UD0 394 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 KAZALD1Q96I82 304 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 BICC1Q9H694 974 aaKnown RBP21.19■□□□□ 0.98
CLK3-210ENST00000563112 CD209Q9NNX6 404 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 GGA3Q9NZ52 723 aa21.19■□□□□ 0.98
CLK3-210ENST00000563112 GTF2IP78347 998 aa21.18■□□□□ 0.98
CLK3-210ENST00000563112 SNAP23O00161 211 aa21.17■□□□□ 0.98
CLK3-210ENST00000563112 MAP2K1Q02750 393 aaPredicted RBP21.17■□□□□ 0.98
CLK3-210ENST00000563112 RABL6Q3YEC7 729 aaPredicted RBP21.17■□□□□ 0.98
CLK3-210ENST00000563112 ANGEL2Q5VTE6 544 aaKnown RBP21.17■□□□□ 0.98
CLK3-210ENST00000563112 CYP4F22Q6NT55 531 aa21.17■□□□□ 0.98
CLK3-210ENST00000563112 HHIPL1Q96JK4 782 aa21.17■□□□□ 0.98
CLK3-210ENST00000563112 MXD3Q9BW11 206 aa21.17■□□□□ 0.98
CLK3-210ENST00000563112 USP44Q9H0E7 712 aa21.17■□□□□ 0.98
CLK3-210ENST00000563112 HDAC9Q9UKV0 1011 aa21.17■□□□□ 0.98
CLK3-210ENST00000563112 ADM5C9JUS6 153 aa21.16■□□□□ 0.98
CLK3-210ENST00000563112 C2orf69Q8N8R5 385 aa21.16■□□□□ 0.98
CLK3-210ENST00000563112 API5Q9BZZ5 524 aaKnown RBP21.16■□□□□ 0.98
CLK3-210ENST00000563112 NOB1Q9ULX3 412 aaKnown RBP21.16■□□□□ 0.98
CLK3-210ENST00000563112 MROH5Q6ZUA9 1318 aa21.15■□□□□ 0.98
CLK3-210ENST00000563112 BRPF1P55201 1214 aaPredicted RBP21.15■□□□□ 0.98
CLK3-210ENST00000563112 UBE4AQ14139 1066 aa21.15■□□□□ 0.98
CLK3-210ENST00000563112 COL13A1Q5TAT6 717 aaPredicted RBP21.15■□□□□ 0.98
CLK3-210ENST00000563112 MIER1Q8N108 512 aa21.15■□□□□ 0.98
CLK3-210ENST00000563112 ANKRD44Q8N8A2 993 aa21.15■□□□□ 0.98
CLK3-210ENST00000563112 WBP1LQ9NX94 342 aa21.15■□□□□ 0.98
CLK3-210ENST00000563112 ASTN2O75129 1339 aaPredicted RBP21.14■□□□□ 0.97
CLK3-210ENST00000563112 PITPNM2Q9BZ72 1349 aa21.14■□□□□ 0.97
CLK3-210ENST00000563112 IRS2Q9Y4H2 1338 aa21.14■□□□□ 0.97
CLK3-210ENST00000563112 IL1R1P14778 569 aa21.14■□□□□ 0.97
CLK3-210ENST00000563112 DLK2Q6UY11 383 aa21.14■□□□□ 0.97
CLK3-210ENST00000563112 PUS3Q9BZE2 481 aaKnown RBP21.14■□□□□ 0.97
CLK3-210ENST00000563112 GBA2Q9HCG7 927 aaPredicted RBP21.14■□□□□ 0.97
CLK3-210ENST00000563112 A0A1B0GUL6 1792 aa21.14■□□□□ 0.97
CLK3-210ENST00000563112 FOXN1O15353 648 aa21.13■□□□□ 0.97
CLK3-210ENST00000563112 MAP2K2P36507 400 aa21.13■□□□□ 0.97
CLK3-210ENST00000563112 CTCFP49711 727 aaPredicted RBP21.13■□□□□ 0.97
CLK3-210ENST00000563112 HUNKP57058 714 aa21.13■□□□□ 0.97
CLK3-210ENST00000563112 KIAA0825Q8IV33 1275 aa21.13■□□□□ 0.97
CLK3-210ENST00000563112 BEGAINQ9BUH8 593 aa21.13■□□□□ 0.97
CLK3-210ENST00000563112 HDAC5Q9UQL6 1122 aa21.13■□□□□ 0.97
CLK3-210ENST00000563112 RARSP54136 660 aaKnown RBP21.12■□□□□ 0.97
CLK3-210ENST00000563112 NBPF9Q3BBW0 867 aa21.12■□□□□ 0.97
CLK3-210ENST00000563112 CDCA5Q96FF9 252 aa21.12■□□□□ 0.97
CLK3-210ENST00000563112 RIPOR2Q9Y4F9 1068 aa21.12■□□□□ 0.97
CLK3-210ENST00000563112 KIF16BQ96L93 1317 aa21.11■□□□□ 0.97
CLK3-210ENST00000563112 UBTFL1P0CB47 393 aaPredicted RBP21.11■□□□□ 0.97
CLK3-210ENST00000563112 METTL24Q5JXM2 366 aa21.11■□□□□ 0.97
CLK3-210ENST00000563112 WNT10BO00744 389 aa21.1■□□□□ 0.97
CLK3-210ENST00000563112 HIBADHP31937 336 aaKnown RBP21.1■□□□□ 0.97
CLK3-210ENST00000563112 FKBP1AP62942 108 aaKnown RBP21.1■□□□□ 0.97
CLK3-210ENST00000563112 TNS4Q8IZW8 715 aa21.1■□□□□ 0.97
CLK3-210ENST00000563112 ZNF646O15015 1829 aaPredicted RBP21.1■□□□□ 0.97
CLK3-210ENST00000563112 AOC2O75106 756 aa21.09■□□□□ 0.97
CLK3-210ENST00000563112 SASH1O94885 1247 aa21.09■□□□□ 0.97
CLK3-210ENST00000563112 LRRC24Q50LG9 513 aa21.09■□□□□ 0.97
CLK3-210ENST00000563112 ARHGAP45Q92619 1136 aa21.09■□□□□ 0.97
CLK3-210ENST00000563112 IPO8O15397 1037 aaKnown RBP21.08■□□□□ 0.97
CLK3-210ENST00000563112 GYG1P46976 350 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms