RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 RPAP1Q9BWH6 1393 aaPredicted RBP11.27□□□□□ -0.61
LINC00838-201ENST00000562956 M0R2C6 588 aa11.27□□□□□ -0.61
LINC00838-201ENST00000562956 SF3B3Q15393 1217 aaKnown RBP11.27□□□□□ -0.61
LINC00838-201ENST00000562956 OSBP2Q969R2 916 aa11.27□□□□□ -0.61
LINC00838-201ENST00000562956 PDRG1Q9NUG6 133 aa11.27□□□□□ -0.61
LINC00838-201ENST00000562956 CYP46A1Q9Y6A2 500 aa11.27□□□□□ -0.61
LINC00838-201ENST00000562956 SLC10A5Q5PT55 438 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 NBPF5PQ86XG9 351 aaPredicted RBP11.26□□□□□ -0.61
LINC00838-201ENST00000562956 LAMB2P55268 1798 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 TRIM37O94972 964 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 CYP2E1P05181 493 aaPredicted RBP11.26□□□□□ -0.61
LINC00838-201ENST00000562956 ARID4AP29374 1257 aaPredicted RBP11.26□□□□□ -0.61
LINC00838-201ENST00000562956 CHRNDQ07001 517 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 TSGA10IPQ3SY00 556 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 TRAPPC3LQ5T215 181 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 CCDC24Q8N4L8 307 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 HMG20BQ9P0W2 317 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 C4BP0C0L5 1744 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 SPEF2Q9C093 1822 aa11.26□□□□□ -0.61
LINC00838-201ENST00000562956 SLC5A1P13866 664 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 RFC4P35249 363 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 INTS4Q96HW7 963 aaKnown RBP11.25□□□□□ -0.61
LINC00838-201ENST00000562956 CDC5LQ99459 802 aaKnown RBP11.25□□□□□ -0.61
LINC00838-201ENST00000562956 NYXQ9GZU5 481 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 LIMCH1Q9UPQ0 1083 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 U3KPZ7 1027 aaPredicted RBP11.25□□□□□ -0.61
LINC00838-201ENST00000562956 CYP21A2P08686 494 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 HSPD1P10809 573 aaKnown RBP11.25□□□□□ -0.61
LINC00838-201ENST00000562956 PSMA5P28066 241 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 NUCB2P80303 420 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 WASHC4Q2M389 1173 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 ANKRD18AQ8IVF6 992 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 DSCC1Q9BVC3 393 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 PIH1D3Q9NQM4 214 aaKnown RBP11.25□□□□□ -0.61
LINC00838-201ENST00000562956 ZDHHC9Q9Y397 364 aa11.25□□□□□ -0.61
LINC00838-201ENST00000562956 LARGE1O95461 756 aa11.24□□□□□ -0.61
LINC00838-201ENST00000562956 ZFYP08048 801 aaPredicted RBP11.24□□□□□ -0.61
LINC00838-201ENST00000562956 UQCRFS1P1P0C7P4 283 aa11.24□□□□□ -0.61
LINC00838-201ENST00000562956 LRRFIP1Q32MZ4 808 aaKnown RBP11.24□□□□□ -0.61
LINC00838-201ENST00000562956 TCEANC2Q96MN5 208 aa11.24□□□□□ -0.61
LINC00838-201ENST00000562956 PUS7LQ9H0K6 701 aaKnown RBP11.24□□□□□ -0.61
LINC00838-201ENST00000562956 TAF1LQ8IZX4 1826 aa11.24□□□□□ -0.61
LINC00838-201ENST00000562956 WTIPA6NIX2 430 aaPredicted RBP11.24□□□□□ -0.61
LINC00838-201ENST00000562956 BLOC1S2Q6QNY1 142 aa11.24□□□□□ -0.61
LINC00838-201ENST00000562956 TPTE2Q6XPS3 522 aa11.24□□□□□ -0.61
LINC00838-201ENST00000562956 CELF1Q92879 486 aaKnown RBP11.24□□□□□ -0.61
LINC00838-201ENST00000562956 BSDC1Q9NW68 430 aaPredicted RBP11.24□□□□□ -0.61
LINC00838-201ENST00000562956 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.23□□□□□ -0.61
LINC00838-201ENST00000562956 A0A0G2JLW4 131 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 RPS6KB1P23443 525 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 BCAMP50895 628 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 RASGRF1Q13972 1273 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 NLRP3Q96P20 1036 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 GBP4Q96PP9 640 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 FOXP2O15409 715 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 TTF1Q15361 905 aaPredicted RBP11.23□□□□□ -0.61
LINC00838-201ENST00000562956 SPATA5Q8NB90 893 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 APPBP2Q92624 585 aa11.23□□□□□ -0.61
LINC00838-201ENST00000562956 IDH1O75874 414 aaKnown RBP11.22□□□□□ -0.61
LINC00838-201ENST00000562956 KRT32Q14532 448 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 NFIXQ14938 502 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 SLC9C2Q5TAH2 1124 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 CLEC17AQ6ZS10 378 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.22□□□□□ -0.61
LINC00838-201ENST00000562956 MINPP1Q9UNW1 487 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 COL24A1Q17RW2 1714 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 DDX11L8A8MPP1 907 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 ADD2P35612 726 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 SLC27A3Q5K4L6 730 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 STOX1Q6ZVD7 989 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 NEK1Q96PY6 1258 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 TPCN1Q9ULQ1 816 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 BAG4O95429 457 aaKnown RBP11.22□□□□□ -0.61
LINC00838-201ENST00000562956 ADRA2BP18089 450 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 TOB2Q14106 344 aaPredicted RBP11.22□□□□□ -0.61
LINC00838-201ENST00000562956 ME3Q16798 604 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 PROM2Q8N271 834 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 C4AP0C0L4 1744 aa11.22□□□□□ -0.61
LINC00838-201ENST00000562956 AKAP11Q9UKA4 1901 aa11.21□□□□□ -0.61
LINC00838-201ENST00000562956 BRWD3Q6RI45 1802 aa11.21□□□□□ -0.61
LINC00838-201ENST00000562956 ARAP2Q8WZ64 1704 aa11.21□□□□□ -0.61
LINC00838-201ENST00000562956 RBM6P78332 1123 aaKnown RBP11.21□□□□□ -0.61
LINC00838-201ENST00000562956 TTLL5Q6EMB2 1281 aa11.21□□□□□ -0.61
LINC00838-201ENST00000562956 WWC3Q9ULE0 1092 aa11.21□□□□□ -0.61
LINC00838-201ENST00000562956 CARMIL3Q8ND23 1372 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 NPHP1O15259 732 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 GPAA1O43292 621 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 DTNBO60941 627 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 TM4SF1P30408 202 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 RPS8P62241 208 aaKnown RBP11.21□□□□□ -0.62
LINC00838-201ENST00000562956 ST3GAL1Q11201 340 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 FOXD4L5Q5VV16 416 aaPredicted RBP11.21□□□□□ -0.62
LINC00838-201ENST00000562956 ZSCAN25Q6NSZ9 544 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 CCDC83Q8IWF9 413 aa11.21□□□□□ -0.62
LINC00838-201ENST00000562956 FOXD4L4Q8WXT5 416 aaPredicted RBP11.21□□□□□ -0.62
LINC00838-201ENST00000562956 ZSCAN31Q96LW9 406 aaPredicted RBP11.21□□□□□ -0.62
LINC00838-201ENST00000562956 ALDH8A1Q9H2A2 487 aaPredicted RBP11.21□□□□□ -0.62
LINC00838-201ENST00000562956 ZNF532Q9HCE3 1301 aa11.2□□□□□ -0.62
LINC00838-201ENST00000562956 TCRBV5S4A2TA0A5A2 114 aa11.2□□□□□ -0.62
LINC00838-201ENST00000562956 PDE6AP16499 860 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms