RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 LRRC7Q96NW7 1537 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 SPHKAPQ2M3C7 1700 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 HSPA1LP34931 641 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 TMEM132EQ6IEE7 984 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 BTLAQ7Z6A9 289 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 ETFBKMTQ8IXQ9 262 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 ABHD17AQ96GS6 310 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 CEP63Q96MT8 703 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 SIN3AQ96ST3 1273 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 NDFIP2Q9NV92 336 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 STIM2Q9P246 746 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 MTMR7Q9Y216 660 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 AMOTL2Q9Y2J4 779 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 TBX22Q9Y458 520 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 RPRD2Q5VT52 1461 aaKnown RBP6.25□□□□□ -1.41
SPG11-211ENST00000558561 ADGRB3O60242 1522 aa6.25□□□□□ -1.41
SPG11-211ENST00000558561 METP08581 1390 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 DCDC2BA2VCK2 349 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 TGFBR3LH3BV60 316 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 KHNYNO15037 678 aaKnown RBP6.24□□□□□ -1.41
SPG11-211ENST00000558561 WFS1O76024 890 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 MICAL2O94851 1124 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 VSIG8P0DPA2 414 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 BRD2P25440 801 aaKnown RBP6.24□□□□□ -1.41
SPG11-211ENST00000558561 TNP2Q05952 138 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 KCNA1Q09470 495 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 SAMD5Q5TGI4 173 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 FOXR1Q6PIV2 292 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 FIGNL1Q6PIW4 674 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 TREML1Q86YW5 311 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 CCER1Q8TC90 406 aaPredicted RBP6.24□□□□□ -1.41
SPG11-211ENST00000558561 HELQQ8TDG4 1101 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 STRN4Q9NRL3 753 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 GNEQ9Y223 722 aaKnown RBP6.24□□□□□ -1.41
SPG11-211ENST00000558561 IVNS1ABPQ9Y6Y0 642 aa6.24□□□□□ -1.41
SPG11-211ENST00000558561 CHD2O14647 1828 aaKnown RBP6.23□□□□□ -1.41
SPG11-211ENST00000558561 TMEM94Q12767 1356 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 OPLAHO14841 1288 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 MAPTP10636 758 aaKnown RBP6.23□□□□□ -1.41
SPG11-211ENST00000558561 FKBP4Q02790 459 aaKnown RBP eCLIP6.23□□□□□ -1.41
SPG11-211ENST00000558561 GAS6Q14393 721 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 GRIN2CQ14957 1233 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 HIF1AQ16665 826 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 IRF7Q92985 503 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 TRERF1Q96PN7 1200 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 USP20Q9Y2K6 914 aa6.23□□□□□ -1.41
SPG11-211ENST00000558561 ANKRD30BQ9BXX2 1392 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 PLEKHG1Q9ULL1 1385 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 NRXN3Q9Y4C0 1643 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 EFSO43281 561 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 ICMTO60725 284 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 FAM157BP0CG42 384 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 MPSTP25325 297 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 INPP5BP32019 993 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 IDH3AP50213 366 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 CTBSQ01459 385 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 TYRO3Q06418 890 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 SFSWAPQ12872 951 aaKnown RBP6.22□□□□□ -1.41
SPG11-211ENST00000558561 ECM1Q16610 540 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 RNFT1Q5M7Z0 435 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 IER5Q5VY09 327 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 TREML4Q6UXN2 200 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 WAPLQ7Z5K2 1190 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 ATCAYQ86WG3 371 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 KCTD17Q8N5Z5 321 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.22□□□□□ -1.41
SPG11-211ENST00000558561 DDX17Q92841 729 aaKnown RBP6.22□□□□□ -1.41
SPG11-211ENST00000558561 CFHR5Q9BXR6 569 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 COL25A1Q9BXS0 654 aaPredicted RBP6.22□□□□□ -1.41
SPG11-211ENST00000558561 BRD7Q9NPI1 651 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 STK26Q9P289 416 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 ATXN7L1Q9ULK2 861 aaPredicted RBP6.22□□□□□ -1.41
SPG11-211ENST00000558561 KIF1BO60333 1816 aa6.22□□□□□ -1.41
SPG11-211ENST00000558561 NEXMIFQ5QGS0 1516 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 KDM5AP29375 1690 aaKnown RBP6.21□□□□□ -1.42
SPG11-211ENST00000558561 H3BRB1 525 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 TOM1O60784 492 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 CD33P20138 364 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 GRNP28799 593 aaKnown RBP6.21□□□□□ -1.42
SPG11-211ENST00000558561 GMPRP36959 345 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 KRT76Q01546 638 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 SF3B2Q13435 895 aaKnown RBP6.21□□□□□ -1.42
SPG11-211ENST00000558561 LCE2AQ5TA79 106 aaPredicted RBP6.21□□□□□ -1.42
SPG11-211ENST00000558561 ILDR2Q71H61 639 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 TUT1Q9H6E5 874 aaKnown RBP6.21□□□□□ -1.42
SPG11-211ENST00000558561 EGFL7Q9UHF1 273 aa6.21□□□□□ -1.42
SPG11-211ENST00000558561 TRPM2O94759 1503 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 SPATA31E1Q6ZUB1 1445 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 SOWAHDA6NJG2 315 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 C2CD2LO14523 706 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 NPR3P17342 541 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 FGFR3P22607 806 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 ZAP70P43403 619 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 EIF1AXP47813 144 aaKnown RBP6.2□□□□□ -1.42
SPG11-211ENST00000558561 NOM1Q5C9Z4 860 aaKnown RBP6.2□□□□□ -1.42
SPG11-211ENST00000558561 PHF24Q9UPV7 400 aa6.2□□□□□ -1.42
SPG11-211ENST00000558561 FAM13AO94988 1023 aa6.19□□□□□ -1.42
SPG11-211ENST00000558561 MX2P20592 715 aa6.19□□□□□ -1.42
SPG11-211ENST00000558561 ARSDP51689 593 aa6.19□□□□□ -1.42
SPG11-211ENST00000558561 NEUROD1Q13562 356 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms