RNA–Protein interactions for RNA: ENST00000557702.5

PABPN1-208, Transcript of poly(A) binding protein nuclear 1, human

TSL 2 BASIC

Gene PABPN1, Length 778 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPN1-208	ENST00000557702	MAP3K11	Q16584	847 aa		12.44	□□□□□ -0.42
PABPN1-208	ENST00000557702	LRP10	Q7Z4F1	713 aa		12.44	□□□□□ -0.42
PABPN1-208	ENST00000557702	PODN	Q7Z5L7	613 aa		12.44	□□□□□ -0.42
PABPN1-208	ENST00000557702	DEFB123	Q8N688	67 aa		12.44	□□□□□ -0.42
PABPN1-208	ENST00000557702	UNC80	Q8N2C7	3258 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	UNCX	A6NJT0	531 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	ZBTB7B	O15156	539 aa	Predicted RBP	12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	HSPA5	P11021	654 aa	Known RBP	12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	SHISA4	Q96DD7	197 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	CLMN	Q96JQ2	1002 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	PTPN18	Q99952	460 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	FZD1	Q9UP38	647 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	NUDC	Q9Y266	331 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	KDM3B	Q7LBC6	1761 aa		12.43	□□□□□ -0.42
PABPN1-208	ENST00000557702	TESPA1	A2RU30	521 aa	Predicted RBP	12.42	□□□□□ -0.42
PABPN1-208	ENST00000557702	MMP14	P50281	582 aa		12.42	□□□□□ -0.42
PABPN1-208	ENST00000557702	PDIA6	Q15084	440 aa		12.42	□□□□□ -0.42
PABPN1-208	ENST00000557702	ZFYVE28	Q9HCC9	887 aa		12.42	□□□□□ -0.42
PABPN1-208	ENST00000557702	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.41	□□□□□ -0.42
PABPN1-208	ENST00000557702	EIF2S2	P20042	333 aa	Known RBP	12.41	□□□□□ -0.42
PABPN1-208	ENST00000557702	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.41	□□□□□ -0.42	5e-12	■■□□□ 13.8
PABPN1-208	ENST00000557702	AIMP1	Q12904	312 aa	Known RBP	12.41	□□□□□ -0.42
PABPN1-208	ENST00000557702	COPS6	Q7L5N1	327 aa		12.41	□□□□□ -0.42
PABPN1-208	ENST00000557702	ZNF428	Q96B54	188 aa		12.41	□□□□□ -0.42
PABPN1-208	ENST00000557702	MYO3B	Q8WXR4	1341 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	SASH1	O94885	1247 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	GNRH1	P01148	92 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	ANXA1	P04083	346 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	GJA5	P36382	358 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	KIF22	Q14807	665 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	MTFR1	Q15390	333 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	PROSER3	Q2NL68	480 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	UBE2Q1	Q7Z7E8	422 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	FAM89A	Q96GI7	184 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	CFAP53	Q96M91	514 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	DEFB129	Q9H1M3	183 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	PRDM6	Q9NQX0	595 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	STAP2	Q9UGK3	403 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	TIMELESS	Q9UNS1	1208 aa		12.4	□□□□□ -0.42
PABPN1-208	ENST00000557702	PER1	O15534	1290 aa	Predicted RBP	12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	EVI5	O60447	810 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	GJA8	P48165	433 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	IREB2	P48200	963 aa	Known RBP	12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	PRMT2	P55345	433 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	TAF1C	Q15572	869 aa	Predicted RBP	12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	DACT2	Q5SW24	774 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702		Q7L0L9	218 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	XAGE3	Q8WTP9	111 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	FBXW7	Q969H0	707 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	MXD3	Q9BW11	206 aa		12.39	□□□□□ -0.43
PABPN1-208	ENST00000557702	WDHD1	O75717	1129 aa	Predicted RBP	12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	GJB1	P08034	283 aa		12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	ATP2B4	P23634	1241 aa		12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	CNGB1	Q14028	1251 aa	Predicted RBP	12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	SUPT20HL1	Q3ZLR7	823 aa		12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	STRIP1	Q5VSL9	837 aa		12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	MTMR10	Q9NXD2	777 aa		12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	PPP2R3B	Q9Y5P8	575 aa		12.38	□□□□□ -0.43
PABPN1-208	ENST00000557702	PSME4	Q14997	1843 aa		12.37	□□□□□ -0.43
PABPN1-208	ENST00000557702	IRS4	O14654	1257 aa	Predicted RBP	12.37	□□□□□ -0.43
PABPN1-208	ENST00000557702	RTL5	Q5HYW3	569 aa	Predicted RBP	12.37	□□□□□ -0.43
PABPN1-208	ENST00000557702	ANKRD13A	Q8IZ07	590 aa		12.37	□□□□□ -0.43
PABPN1-208	ENST00000557702	SEC31B	Q9NQW1	1179 aa		12.37	□□□□□ -0.43
PABPN1-208	ENST00000557702	COL1A1	P02452	1464 aa	Predicted RBP	12.37	□□□□□ -0.43
PABPN1-208	ENST00000557702	XDH	P47989	1333 aa		12.37	□□□□□ -0.43
PABPN1-208	ENST00000557702	VCAN	P13611	3396 aa		12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	USP2	O75604	605 aa	Predicted RBP	12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	FARP2	O94887	1054 aa	Predicted RBP	12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	BMP8B	P34820	402 aa		12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	LACTB	P83111	547 aa	Predicted RBP	12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	OPTN	Q96CV9	577 aa		12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	MS4A4A	Q96JQ5	239 aa		12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	ARHGAP39	Q9C0H5	1083 aa		12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	RNF208	Q9H0X6	261 aa		12.36	□□□□□ -0.43
PABPN1-208	ENST00000557702	NEFM	P07197	916 aa		12.35	□□□□□ -0.43
PABPN1-208	ENST00000557702	CCL5	P13501	91 aa		12.35	□□□□□ -0.43
PABPN1-208	ENST00000557702	BRI3BP	Q8WY22	251 aa		12.35	□□□□□ -0.43
PABPN1-208	ENST00000557702	ZBED3	Q96IU2	234 aa	Predicted RBP	12.35	□□□□□ -0.43
PABPN1-208	ENST00000557702	COL4A1	P02462	1669 aa		12.35	□□□□□ -0.43
PABPN1-208	ENST00000557702	LAMB1	P07942	1786 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	CCL15-CCL14	A0A0B4J2E2	113 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	TLR2	O60603	784 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	HSP90B1	P14625	803 aa	Known RBP	12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	HOXD10	P28358	340 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	GRK4	P32298	578 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	GTF2A2	P52657	109 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	CCL15	Q16663	113 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	LRIT3	Q3SXY7	679 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	KIAA0825	Q8IV33	1275 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	RAET1E	Q8TD07	263 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	ISCA1	Q9BUE6	129 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	ELP3	Q9H9T3	547 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	BIN2	Q9UBW5	565 aa	Predicted RBP	12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	TSPYL4	Q9UJ04	414 aa		12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	ZNF646	O15015	1829 aa	Predicted RBP	12.34	□□□□□ -0.43
PABPN1-208	ENST00000557702	ATP5J2-PTCD1	G3V325	749 aa		12.33	□□□□□ -0.44
PABPN1-208	ENST00000557702	UBXN2A	P68543	259 aa		12.33	□□□□□ -0.44
PABPN1-208	ENST00000557702	DLGAP5	Q15398	846 aa		12.33	□□□□□ -0.44
PABPN1-208	ENST00000557702	CCDC152	Q4G0S7	254 aa		12.33	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms