RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MMP14P50281 582 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 RARSP54136 660 aaKnown RBP14.55□□□□□ -0.08
RTN3-209ENST00000538995 KIF4BQ2VIQ3 1234 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 STRIP1Q5VSL9 837 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 CDC37L1Q7L3B6 337 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 SAMD7Q7Z3H4 446 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 USP44Q9H0E7 712 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 BICC1Q9H694 974 aaKnown RBP14.55□□□□□ -0.08
RTN3-209ENST00000538995 CNNM1Q9NRU3 951 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 MKRN1Q9UHC7 482 aaKnown RBP14.55□□□□□ -0.08
RTN3-209ENST00000538995 IRS2Q9Y4H2 1338 aa14.55□□□□□ -0.08
RTN3-209ENST00000538995 TRAF5O00463 557 aa14.54□□□□□ -0.08
RTN3-209ENST00000538995 USP17L8P0C7I0 530 aa14.54□□□□□ -0.08
RTN3-209ENST00000538995 TBC1D10BQ4KMP7 808 aaPredicted RBP14.54□□□□□ -0.08
RTN3-209ENST00000538995 DACT2Q5SW24 774 aa14.54□□□□□ -0.08
RTN3-209ENST00000538995 TXNRD3Q86VQ6 643 aa14.54□□□□□ -0.08
RTN3-209ENST00000538995 ANKRD44Q8N8A2 993 aa14.54□□□□□ -0.08
RTN3-209ENST00000538995 GLIS2Q9BZE0 524 aaPredicted RBP14.54□□□□□ -0.08
RTN3-209ENST00000538995 EGFRP00533 1210 aa14.53□□□□□ -0.08
RTN3-209ENST00000538995 KLRK1P26718 216 aa14.53□□□□□ -0.08
RTN3-209ENST00000538995 ARHGAP45Q92619 1136 aa14.53□□□□□ -0.08
RTN3-209ENST00000538995 ZNF594Q96JF6 807 aaPredicted RBP14.53□□□□□ -0.08
RTN3-209ENST00000538995 ABT1Q9ULW3 272 aaKnown RBP14.53□□□□□ -0.08
RTN3-209ENST00000538995 NOB1Q9ULX3 412 aaKnown RBP14.53□□□□□ -0.08
RTN3-209ENST00000538995 MROH5Q6ZUA9 1318 aa14.52□□□□□ -0.08
RTN3-209ENST00000538995 TAF5LO75529 589 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 HNRNPUQ00839 825 aaKnown RBP eCLIP14.52□□□□□ -0.09
RTN3-209ENST00000538995 DEFB115Q30KQ5 88 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 IFFO2Q5TF58 517 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 CST9Q5W186 159 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 ZNF804AQ7Z570 1209 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 HELBQ8NG08 1087 aaPredicted RBP14.52□□□□□ -0.09
RTN3-209ENST00000538995 DCPSQ96C86 337 aaKnown RBP14.52□□□□□ -0.09
RTN3-209ENST00000538995 CD209Q9NNX6 404 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 HDAC5Q9UQL6 1122 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 TLL2Q9Y6L7 1015 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 A0A1B0GUL6 1792 aa14.52□□□□□ -0.09
RTN3-209ENST00000538995 PITPNM2Q9BZ72 1349 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 CELF2O95319 508 aaKnown RBP14.51□□□□□ -0.09
RTN3-209ENST00000538995 VEGFBP49765 207 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 FMR1Q06787 632 aaKnown RBP eCLIP14.51□□□□□ -0.09
RTN3-209ENST00000538995 UBE4AQ14139 1066 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 TTLL5Q6EMB2 1281 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 KRT26Q7Z3Y9 468 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 OGFOD1Q8N543 542 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 HHIPL1Q96JK4 782 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 MYOZ2Q9NPC6 264 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 GGA3Q9NZ52 723 aa14.51□□□□□ -0.09
RTN3-209ENST00000538995 SNAP23O00161 211 aa14.5□□□□□ -0.09
RTN3-209ENST00000538995 UBTFL1P0CB47 393 aaPredicted RBP14.5□□□□□ -0.09
RTN3-209ENST00000538995 IL1R1P14778 569 aa14.5□□□□□ -0.09
RTN3-209ENST00000538995 RBM26Q5T8P6 1007 aaKnown RBP14.5□□□□□ -0.09
RTN3-209ENST00000538995 SULF1Q8IWU6 871 aa14.5□□□□□ -0.09
RTN3-209ENST00000538995 RIPOR2Q9Y4F9 1068 aa14.5□□□□□ -0.09
RTN3-209ENST00000538995 TRPM7Q96QT4 1865 aa14.5□□□□□ -0.09
RTN3-209ENST00000538995 ZNF646O15015 1829 aaPredicted RBP14.5□□□□□ -0.09
RTN3-209ENST00000538995 IPO8O15397 1037 aaKnown RBP14.49□□□□□ -0.09
RTN3-209ENST00000538995 HSPA1AP0DMV8 641 aaKnown RBP14.49□□□□□ -0.09
RTN3-209ENST00000538995 HSPA1BP0DMV9 641 aaKnown RBP14.49□□□□□ -0.09
RTN3-209ENST00000538995 ECE1P42892 770 aa14.49□□□□□ -0.09
RTN3-209ENST00000538995 FKBP1AP62942 108 aaKnown RBP14.49□□□□□ -0.09
RTN3-209ENST00000538995 GTF2IP78347 998 aa14.49□□□□□ -0.09
RTN3-209ENST00000538995 SAPCD2Q86UD0 394 aa14.49□□□□□ -0.09
RTN3-209ENST00000538995 USP48Q86UV5 1035 aa14.49□□□□□ -0.09
RTN3-209ENST00000538995 FBXW7Q969H0 707 aa14.49□□□□□ -0.09
RTN3-209ENST00000538995 PUS3Q9BZE2 481 aaKnown RBP14.49□□□□□ -0.09
RTN3-209ENST00000538995 ZBED9Q6R2W3 1325 aa14.48□□□□□ -0.09
RTN3-209ENST00000538995 PLIN1O60240 522 aa14.48□□□□□ -0.09
RTN3-209ENST00000538995 SCARF1Q14162 830 aa14.48□□□□□ -0.09
RTN3-209ENST00000538995 INTS3Q68E01 1043 aaKnown RBP14.48□□□□□ -0.09
RTN3-209ENST00000538995 HDAC9Q9UKV0 1011 aa14.48□□□□□ -0.09
RTN3-209ENST00000538995 THSD7BQ9C0I4 1608 aa14.48□□□□□ -0.09
RTN3-209ENST00000538995 WDR33Q9C0J8 1336 aaKnown RBP14.47□□□□□ -0.09
RTN3-209ENST00000538995 ADM5C9JUS6 153 aa14.47□□□□□ -0.09
RTN3-209ENST00000538995 METTL24Q5JXM2 366 aa14.47□□□□□ -0.09
RTN3-209ENST00000538995 ANGEL2Q5VTE6 544 aaKnown RBP14.47□□□□□ -0.09
RTN3-209ENST00000538995 VGLL2Q8N8G2 317 aa14.47□□□□□ -0.09
RTN3-209ENST00000538995 MXD3Q9BW11 206 aa14.47□□□□□ -0.09
RTN3-209ENST00000538995 ZNF408Q9H9D4 720 aa14.47□□□□□ -0.09
RTN3-209ENST00000538995 FBXO3Q9UK99 471 aa14.47□□□□□ -0.09
RTN3-209ENST00000538995 FAM205AQ6ZU69 1335 aa14.46□□□□□ -0.09
RTN3-209ENST00000538995 SASH1O94885 1247 aa14.46□□□□□ -0.09
RTN3-209ENST00000538995 PDE8BO95263 885 aa14.46□□□□□ -0.09
RTN3-209ENST00000538995 TRIM27P14373 513 aa14.46□□□□□ -0.09
RTN3-209ENST00000538995 HIBADHP31937 336 aaKnown RBP14.46□□□□□ -0.09
RTN3-209ENST00000538995 RFX5P48382 616 aaPredicted RBP14.46□□□□□ -0.09
RTN3-209ENST00000538995 LRRC24Q50LG9 513 aa14.46□□□□□ -0.09
RTN3-209ENST00000538995 ATF7IPQ6VMQ6 1270 aa14.46□□□□□ -0.09
RTN3-209ENST00000538995 CAPNS2Q96L46 248 aa14.46□□□□□ -0.09
RTN3-209ENST00000538995 ASTN2O75129 1339 aaPredicted RBP14.45□□□□□ -0.1
RTN3-209ENST00000538995 EYA2O00167 538 aa14.45□□□□□ -0.1
RTN3-209ENST00000538995 WNT10BO00744 389 aa14.45□□□□□ -0.1
RTN3-209ENST00000538995 GNAI3P08754 354 aa14.45□□□□□ -0.1
RTN3-209ENST00000538995 MAP2K1Q02750 393 aaPredicted RBP14.45□□□□□ -0.1
RTN3-209ENST00000538995 PTPN12Q05209 780 aaKnown RBP14.45□□□□□ -0.1
RTN3-209ENST00000538995 PAXIP1Q6ZW49 1069 aaPredicted RBP14.45□□□□□ -0.1
RTN3-209ENST00000538995 KIAA0825Q8IV33 1275 aa14.45□□□□□ -0.1
RTN3-209ENST00000538995 CERS5Q8N5B7 392 aa14.45□□□□□ -0.1
RTN3-209ENST00000538995 TDRD7Q8NHU6 1098 aaKnown RBP14.45□□□□□ -0.1
RTN3-209ENST00000538995 ZBED3Q96IU2 234 aaPredicted RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms