RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 NOM1Q5C9Z4 860 aaKnown RBP10.43□□□□□ -0.74
NEDD8-207ENST00000533242 ZBTB38Q8NAP3 1195 aaPredicted RBP10.43□□□□□ -0.74
NEDD8-207ENST00000533242 MYOZ2Q9NPC6 264 aa10.43□□□□□ -0.74
NEDD8-207ENST00000533242 ANKIB1Q9P2G1 1089 aa10.43□□□□□ -0.74
NEDD8-207ENST00000533242 HDAC9Q9UKV0 1011 aa10.43□□□□□ -0.74
NEDD8-207ENST00000533242 USP17L8P0C7I0 530 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 RTL5Q5HYW3 569 aaPredicted RBP10.42□□□□□ -0.74
NEDD8-207ENST00000533242 SEC31BQ9NQW1 1179 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 LAS1LQ9Y4W2 734 aaKnown RBP10.42□□□□□ -0.74
NEDD8-207ENST00000533242 LAMB1P07942 1786 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 TNRC18O15417 2968 aaPredicted RBP10.42□□□□□ -0.74
NEDD8-207ENST00000533242 PDE4AP27815 886 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 CCDC152Q4G0S7 254 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 ERICH6Q7L0X2 663 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 WWC1Q8IX03 1113 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 TRIM35Q9UPQ4 493 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 NOP58Q9Y2X3 529 aaKnown RBP10.42□□□□□ -0.74
NEDD8-207ENST00000533242 XDHP47989 1333 aa10.42□□□□□ -0.74
NEDD8-207ENST00000533242 USP17L3A6NCW0 530 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 USP17L4A6NCW7 530 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 ATP2B4P23634 1241 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 TM4SF4P48230 202 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 NEUROD2Q15784 382 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 USP17L1Q7RTZ2 530 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 ZNF296Q8WUU4 475 aaPredicted RBP10.41□□□□□ -0.74
NEDD8-207ENST00000533242 UBE2Q2LH0YL09 131 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 PDE8AO60658 829 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 TBC1D8O95759 1140 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 PCCAP05165 728 aaPredicted RBP10.41□□□□□ -0.74
NEDD8-207ENST00000533242 FBXO46Q6PJ61 603 aaPredicted RBP10.41□□□□□ -0.74
NEDD8-207ENST00000533242 RIC3Q7Z5B4 369 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 PODNQ7Z5L7 613 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 BACH2Q9BYV9 841 aa10.41□□□□□ -0.74
NEDD8-207ENST00000533242 RBBP6Q7Z6E9 1792 aaKnown RBP10.4□□□□□ -0.74
NEDD8-207ENST00000533242 GPR25O00155 361 aa10.4□□□□□ -0.74
NEDD8-207ENST00000533242 MOB2Q70IA6 237 aa10.4□□□□□ -0.74
NEDD8-207ENST00000533242 ANKRD18AQ8IVF6 992 aa10.4□□□□□ -0.74
NEDD8-207ENST00000533242 RUNDC1Q96C34 613 aa10.4□□□□□ -0.74
NEDD8-207ENST00000533242 CFHR5Q9BXR6 569 aa10.4□□□□□ -0.74
NEDD8-207ENST00000533242 CCDC191Q8NCU4 936 aa10.4□□□□□ -0.74
NEDD8-207ENST00000533242 IPO9Q96P70 1041 aaKnown RBP10.4□□□□□ -0.74
NEDD8-207ENST00000533242 ECM29Q5VYK3 1845 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 MED23Q9ULK4 1368 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 E9PSI1 815 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 NF2P35240 595 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 MMP14P50281 582 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 SREBF2Q12772 1141 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 MYD88Q99836 296 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 TTLL12Q14166 644 aaPredicted RBP10.39□□□□□ -0.75
NEDD8-207ENST00000533242 GCC1Q96CN9 775 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 MYO3BQ8WXR4 1341 aa10.39□□□□□ -0.75
NEDD8-207ENST00000533242 FKTNO75072 461 aa10.38□□□□□ -0.75
NEDD8-207ENST00000533242 ANP32AP39687 249 aaKnown RBP10.38□□□□□ -0.75
NEDD8-207ENST00000533242 NBPF9Q3BBW0 867 aa10.38□□□□□ -0.75
NEDD8-207ENST00000533242 CWC25Q9NXE8 425 aaPredicted RBP10.38□□□□□ -0.75
NEDD8-207ENST00000533242 DACT2Q5SW24 774 aa10.38□□□□□ -0.75
NEDD8-207ENST00000533242 ARMC9Q7Z3E5 817 aa10.38□□□□□ -0.75
NEDD8-207ENST00000533242 CDC5LQ99459 802 aaKnown RBP10.38□□□□□ -0.75
NEDD8-207ENST00000533242 PHAXQ9H814 394 aaKnown RBP10.38□□□□□ -0.75
NEDD8-207ENST00000533242 MBIPQ9NS73 344 aa10.38□□□□□ -0.75
NEDD8-207ENST00000533242 COL1A1P02452 1464 aaPredicted RBP10.37□□□□□ -0.75
NEDD8-207ENST00000533242 PRAMEF18Q5VWM3 479 aa10.37□□□□□ -0.75
NEDD8-207ENST00000533242 OGFOD1Q8N543 542 aa10.37□□□□□ -0.75
NEDD8-207ENST00000533242 METTL22Q9BUU2 404 aaPredicted RBP10.37□□□□□ -0.75
NEDD8-207ENST00000533242 SCAF8Q9UPN6 1271 aaKnown RBP10.37□□□□□ -0.75
NEDD8-207ENST00000533242 TNNQ9UQP3 1299 aa10.37□□□□□ -0.75
NEDD8-207ENST00000533242 ZNF853P0CG23 659 aa10.36□□□□□ -0.75
NEDD8-207ENST00000533242 MS4A1P11836 297 aa10.36□□□□□ -0.75
NEDD8-207ENST00000533242 STRIP1Q5VSL9 837 aa10.36□□□□□ -0.75
NEDD8-207ENST00000533242 APOBEC3FQ8IUX4 373 aaKnown RBP10.36□□□□□ -0.75
NEDD8-207ENST00000533242 CCDC85AQ96PX6 553 aaPredicted RBP10.36□□□□□ -0.75
NEDD8-207ENST00000533242 COA1Q9GZY4 146 aa10.36□□□□□ -0.75
NEDD8-207ENST00000533242 WNT10BO00744 389 aa10.36□□□□□ -0.75
NEDD8-207ENST00000533242 DDX58O95786 925 aaKnown RBP10.36□□□□□ -0.75
NEDD8-207ENST00000533242 ALDH1A1P00352 501 aa10.36□□□□□ -0.75
NEDD8-207ENST00000533242 CTSWP56202 376 aa10.36□□□□□ -0.75
NEDD8-207ENST00000533242 PTPN12Q05209 780 aaKnown RBP10.36□□□□□ -0.75
NEDD8-207ENST00000533242 JARID2Q92833 1246 aaPredicted RBP10.36□□□□□ -0.75
NEDD8-207ENST00000533242 BSDC1Q9NW68 430 aaPredicted RBP10.36□□□□□ -0.75
NEDD8-207ENST00000533242 MKRN3Q13064 507 aaKnown RBP10.35□□□□□ -0.75
NEDD8-207ENST00000533242 NBR1Q14596 966 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 LDLRAD1Q5T700 205 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 SPRYD7Q5W111 196 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 PANK1Q8TE04 598 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 MXD3Q9BW11 206 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 MINPP1Q9UNW1 487 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 A0A1B0GUL6 1792 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 CCT4P50991 539 aaKnown RBP10.35□□□□□ -0.75
NEDD8-207ENST00000533242 CENPQQ7L2Z9 268 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-207ENST00000533242 FBXW7Q969H0 707 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 ZBED3Q96IU2 234 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-207ENST00000533242 CHMP4AQ9BY43 222 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 IFT57Q9NWB7 429 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 LEMD3Q9Y2U8 911 aa10.35□□□□□ -0.75
NEDD8-207ENST00000533242 MANSC4A6NHS7 340 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-207ENST00000533242 SASH1O94885 1247 aa10.34□□□□□ -0.75
NEDD8-207ENST00000533242 IGHDP01880 384 aa10.34□□□□□ -0.75
NEDD8-207ENST00000533242 INHBEP58166 350 aa10.34□□□□□ -0.75
NEDD8-207ENST00000533242 TTLL11Q8NHH1 800 aa10.34□□□□□ -0.75
NEDD8-207ENST00000533242 R3HDMLQ9H3Y0 253 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms