RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 EYA2O00167 538 aa22.86■■□□□ 1.25
PCF11-203ENST00000530304 LRMPQ12912 555 aa22.86■■□□□ 1.25
PCF11-203ENST00000530304 A0A1B0GUL7 405 aa22.86■■□□□ 1.25
PCF11-203ENST00000530304 RNF113AO15541 343 aaKnown RBP22.86■■□□□ 1.25
PCF11-203ENST00000530304 CHAF1AQ13111 956 aaPredicted RBP22.86■■□□□ 1.25
PCF11-203ENST00000530304 CHST3Q7LGC8 479 aa22.86■■□□□ 1.25
PCF11-203ENST00000530304 USP28Q96RU2 1077 aa22.86■■□□□ 1.25
PCF11-203ENST00000530304 NAP1L2Q9ULW6 460 aaPredicted RBP22.86■■□□□ 1.25
PCF11-203ENST00000530304 FAM177BA6PVY3 158 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 PPFIA3O75145 1194 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 PDIA3P30101 505 aaKnown RBP22.85■■□□□ 1.25
PCF11-203ENST00000530304 MYH15Q9Y2K3 1946 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 SALL1Q9NSC2 1324 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 A1BGP04217 495 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 PKNOX2Q96KN3 472 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 GOLPH3LQ9H4A5 285 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 ZBTB3Q9H5J0 574 aa22.85■■□□□ 1.25
PCF11-203ENST00000530304 TMEM94Q12767 1356 aa22.84■■□□□ 1.25
PCF11-203ENST00000530304 ZNF274Q96GC6 653 aaPredicted RBP22.84■■□□□ 1.25
PCF11-203ENST00000530304 SNW1Q13573 536 aaKnown RBP22.84■■□□□ 1.25
PCF11-203ENST00000530304 IQCB1Q15051 598 aa22.84■■□□□ 1.25
PCF11-203ENST00000530304 ZSCAN25Q6NSZ9 544 aa22.84■■□□□ 1.25
PCF11-203ENST00000530304 CCDC191Q8NCU4 936 aa22.84■■□□□ 1.25
PCF11-203ENST00000530304 M0R2C6 588 aa22.83■■□□□ 1.25
PCF11-203ENST00000530304 RIOK3O14730 519 aaKnown RBP22.83■■□□□ 1.25
PCF11-203ENST00000530304 CTAGE5O15320 804 aa22.83■■□□□ 1.25
PCF11-203ENST00000530304 CLIP2Q9UDT6 1046 aa22.83■■□□□ 1.25
PCF11-203ENST00000530304 GUCY1B3Q02153 619 aa22.83■■□□□ 1.25
PCF11-203ENST00000530304 ATL3Q6DD88 541 aa22.83■■□□□ 1.25
PCF11-203ENST00000530304 ZNF396Q96N95 335 aaPredicted RBP22.83■■□□□ 1.25
PCF11-203ENST00000530304 PUS3Q9BZE2 481 aaKnown RBP22.83■■□□□ 1.25
PCF11-203ENST00000530304 TTLL5Q6EMB2 1281 aa22.82■■□□□ 1.24
PCF11-203ENST00000530304 C11orf57Q6ZUT1 292 aaPredicted RBP22.82■■□□□ 1.24
PCF11-203ENST00000530304 TJP1Q07157 1748 aa22.82■■□□□ 1.24
PCF11-203ENST00000530304 GOLGA6L19H0YKK7 550 aa22.82■■□□□ 1.24
PCF11-203ENST00000530304 CIAO1O76071 339 aa22.82■■□□□ 1.24
PCF11-203ENST00000530304 ATG3Q9NT62 314 aa22.82■■□□□ 1.24
PCF11-203ENST00000530304 NUP188Q5SRE5 1749 aa22.82■■□□□ 1.24
PCF11-203ENST00000530304 TNS3Q68CZ2 1445 aa22.82■■□□□ 1.24
PCF11-203ENST00000530304 ILDR1Q86SU0 546 aaPredicted RBP22.81■■□□□ 1.24
PCF11-203ENST00000530304 OSBP2Q969R2 916 aa22.81■■□□□ 1.24
PCF11-203ENST00000530304 BCL2L12Q9HB09 334 aa22.81■■□□□ 1.24
PCF11-203ENST00000530304 FKBP4Q02790 459 aaKnown RBP eCLIP22.81■■□□□ 1.24
PCF11-203ENST00000530304 STX1AQ16623 288 aa22.81■■□□□ 1.24
PCF11-203ENST00000530304 CCDC73Q6ZRK6 1079 aa22.81■■□□□ 1.24
PCF11-203ENST00000530304 ENGASEQ8NFI3 743 aa22.8■■□□□ 1.24
PCF11-203ENST00000530304 PARP4Q9UKK3 1724 aaKnown RBP22.8■■□□□ 1.24
PCF11-203ENST00000530304 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.8■■□□□ 1.24
PCF11-203ENST00000530304 CDC25BP30305 580 aa22.8■■□□□ 1.24
PCF11-203ENST00000530304 CCDC144BQ3MJ40 725 aa22.8■■□□□ 1.24
PCF11-203ENST00000530304 CCDC144CPQ8IYA2 1237 aa22.8■■□□□ 1.24
PCF11-203ENST00000530304 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.8■■□□□ 1.24
PCF11-203ENST00000530304 CCDC94Q9BW85 323 aaPredicted RBP22.8■■□□□ 1.24
PCF11-203ENST00000530304 CARMIL3Q8ND23 1372 aa22.8■■□□□ 1.24
PCF11-203ENST00000530304 SARM1Q6SZW1 724 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 CACTINQ8WUQ7 758 aaKnown RBP22.79■■□□□ 1.24
PCF11-203ENST00000530304 CEP126Q9P2H0 1117 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 KINO60870 393 aaKnown RBP22.79■■□□□ 1.24
PCF11-203ENST00000530304 FDPSP14324 419 aaKnown RBP22.79■■□□□ 1.24
PCF11-203ENST00000530304 ME1P48163 572 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 FAM160A1Q05DH4 1040 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 FBXL16Q8N461 479 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 ZCRB1Q8TBF4 217 aaKnown RBP22.79■■□□□ 1.24
PCF11-203ENST00000530304 CPDO75976 1380 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 PCDH11XQ9BZA7 1347 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 PCDH11YQ9BZA8 1340 aa22.79■■□□□ 1.24
PCF11-203ENST00000530304 CHMP4CQ96CF2 233 aa22.78■■□□□ 1.24
PCF11-203ENST00000530304 GPHNQ9NQX3 736 aaPredicted RBP22.78■■□□□ 1.24
PCF11-203ENST00000530304 SPEF2Q9C093 1822 aa22.78■■□□□ 1.24
PCF11-203ENST00000530304 SPATA31A3Q5VYP0 1347 aa22.78■■□□□ 1.24
PCF11-203ENST00000530304 ERVV-2B6SEH9 535 aa22.78■■□□□ 1.24
PCF11-203ENST00000530304 EVCP57679 992 aa22.78■■□□□ 1.24
PCF11-203ENST00000530304 FSIP1Q8NA03 581 aa22.78■■□□□ 1.24
PCF11-203ENST00000530304 CCDC158Q5M9N0 1113 aa22.77■■□□□ 1.24
PCF11-203ENST00000530304 C16orf45Q96MC5 204 aaPredicted RBP22.77■■□□□ 1.24
PCF11-203ENST00000530304 A0A087WWV3 80 aa22.77■■□□□ 1.23
PCF11-203ENST00000530304 CCDC57Q2TAC2 916 aa22.77■■□□□ 1.23
PCF11-203ENST00000530304 FOXP2O15409 715 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 HAND2P61296 217 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 TTC39AQ5SRH9 613 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 CTNNA3Q9UI47 895 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 PCDHA7Q9UN72 937 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 UBR2Q8IWV8 1755 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 KCPQ6ZWJ8 1503 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 BECN2A8MW95 431 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 ADORA1P30542 326 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 WASHC4Q2M389 1173 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 GORABQ5T7V8 394 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 DHX40Q8IX18 779 aaKnown RBP22.76■■□□□ 1.23
PCF11-203ENST00000530304 XAGE2Q96GT9 111 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 MRFAP1L1Q96HT8 127 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 ANO10Q9NW15 660 aa22.76■■□□□ 1.23
PCF11-203ENST00000530304 CTIFO43310 598 aaKnown RBP22.75■■□□□ 1.23
PCF11-203ENST00000530304 LRRFIP1Q32MZ4 808 aaKnown RBP22.75■■□□□ 1.23
PCF11-203ENST00000530304 IMMTQ16891 758 aaKnown RBP22.75■■□□□ 1.23
PCF11-203ENST00000530304 LRRC8AQ8IWT6 810 aa22.75■■□□□ 1.23
PCF11-203ENST00000530304 RTEL1Q9NZ71 1219 aa22.75■■□□□ 1.23
PCF11-203ENST00000530304 DCCP43146 1447 aa22.74■■□□□ 1.23
PCF11-203ENST00000530304 FGAP02671 866 aa22.74■■□□□ 1.23
PCF11-203ENST00000530304 TOM1L2Q6ZVM7 507 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms