RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ZKSCAN1P17029 563 aaPredicted RBP10.05□□□□□ -0.8
RNF4-220ENST00000513578 YY1P25490 414 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 KCNQ4P56696 695 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 CREB3L3Q68CJ9 461 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 ZSCAN25Q6NSZ9 544 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 DDX46Q7L014 1031 aaKnown RBP10.05□□□□□ -0.8
RNF4-220ENST00000513578 RASEFQ8IZ41 740 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 DSCC1Q9BVC3 393 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 SEC31BQ9NQW1 1179 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 LRRC4BQ9NT99 713 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 BSDC1Q9NW68 430 aaPredicted RBP10.05□□□□□ -0.8
RNF4-220ENST00000513578 CARMIL3Q8ND23 1372 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 MYH13Q9UKX3 1938 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 COL4A1P02462 1669 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 SLC27A2O14975 620 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 PSMA5P28066 241 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 RFC4P35249 363 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 KRT32Q14532 448 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 RAB3GAP1Q15042 981 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 VPS53Q5VIR6 699 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 CCDC102BQ68D86 513 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 CLEC17AQ6ZS10 378 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 ZNF589Q86UQ0 364 aaPredicted RBP10.04□□□□□ -0.8
RNF4-220ENST00000513578 ANKRD18AQ8IVF6 992 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 TMX3Q96JJ7 454 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 NLRP3Q96P20 1036 aa10.04□□□□□ -0.8
RNF4-220ENST00000513578 SRP68Q9UHB9 627 aaKnown RBP10.04□□□□□ -0.8
RNF4-220ENST00000513578 TNS1Q9HBL0 1735 aaKnown RBP10.04□□□□□ -0.8
RNF4-220ENST00000513578 TNRC6CQ9HCJ0 1690 aaKnown RBP10.03□□□□□ -0.8
RNF4-220ENST00000513578 FAM177BA6PVY3 158 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 HSP90AA1P07900 732 aaKnown RBP10.03□□□□□ -0.8
RNF4-220ENST00000513578 MCAMP43121 646 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 NUCB2P80303 420 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 UBE4AQ14139 1066 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 PRPF40BQ6NWY9 871 aaKnown RBP10.03□□□□□ -0.8
RNF4-220ENST00000513578 RUFY3Q7L099 469 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 AMIGO3Q86WK7 504 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 NBPF5PQ86XG9 351 aaPredicted RBP10.03□□□□□ -0.8
RNF4-220ENST00000513578 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.03□□□□□ -0.8
RNF4-220ENST00000513578 NRXN2Q9P2S2 1712 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 CYP46A1Q9Y6A2 500 aa10.03□□□□□ -0.8
RNF4-220ENST00000513578 QSER1Q2KHR3 1735 aa10.02□□□□□ -0.8
RNF4-220ENST00000513578 IGSF3O75054 1194 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 CYP2E1P05181 493 aaPredicted RBP10.02□□□□□ -0.81
RNF4-220ENST00000513578 GTF2E1P29083 439 aaPredicted RBP10.02□□□□□ -0.81
RNF4-220ENST00000513578 ZAP70P43403 619 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 CHRNDQ07001 517 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 SCARF1Q14162 830 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 UBE3CQ15386 1083 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 APPBP2Q92624 585 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 ZSCAN31Q96LW9 406 aaPredicted RBP10.02□□□□□ -0.81
RNF4-220ENST00000513578 PCDH10Q9P2E7 1040 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 NDUFB9Q9Y6M9 179 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 ZNF804BA4D1E1 1349 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 MAST3O60307 1309 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 KIAA1551Q9HCM1 1747 aa10.02□□□□□ -0.81
RNF4-220ENST00000513578 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.01□□□□□ -0.81
RNF4-220ENST00000513578 TRIM37O94972 964 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 TM4SF1P30408 202 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 ADD2P35612 726 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 PHKA1P46020 1223 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 KCNJ4P48050 445 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 RPS8P62241 208 aaKnown RBP10.01□□□□□ -0.81
RNF4-220ENST00000513578 FKBP4Q02790 459 aaKnown RBP eCLIP10.01□□□□□ -0.81
RNF4-220ENST00000513578 NBR1Q14596 966 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 NFIXQ14938 502 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 ANKRD1Q15327 319 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 TXNRD1Q16881 649 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 C3orf67Q6ZVT6 689 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 CCDC125Q86Z20 511 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 SPRYD3Q8NCJ5 442 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 JAKMIP1Q96N16 626 aaKnown RBP10.01□□□□□ -0.81
RNF4-220ENST00000513578 SEC62Q99442 399 aaKnown RBP10.01□□□□□ -0.81
RNF4-220ENST00000513578 UPF3BQ9BZI7 483 aaKnown RBP10.01□□□□□ -0.81
RNF4-220ENST00000513578 ANKRD2Q9GZV1 360 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 SH2B1Q9NRF2 756 aaPredicted RBP10.01□□□□□ -0.81
RNF4-220ENST00000513578 LIMCH1Q9UPQ0 1083 aa10.01□□□□□ -0.81
RNF4-220ENST00000513578 PDS5AQ29RF7 1337 aaKnown RBP10.01□□□□□ -0.81
RNF4-220ENST00000513578 CCDC88AQ3V6T2 1871 aa10□□□□□ -0.81
RNF4-220ENST00000513578 CHD4Q14839 1912 aa10□□□□□ -0.81
RNF4-220ENST00000513578 LRRC37AA6NMS7 1700 aa10□□□□□ -0.81
RNF4-220ENST00000513578 SEMA3EO15041 775 aa10□□□□□ -0.81
RNF4-220ENST00000513578 FRAT2O75474 233 aaPredicted RBP10□□□□□ -0.81
RNF4-220ENST00000513578 HMGB1P09429 215 aaKnown RBP10□□□□□ -0.81
RNF4-220ENST00000513578 HSPD1P10809 573 aaKnown RBP10□□□□□ -0.81
RNF4-220ENST00000513578 GYS1P13807 737 aa10□□□□□ -0.81
RNF4-220ENST00000513578 CASTP20810 708 aaKnown RBP10□□□□□ -0.81
RNF4-220ENST00000513578 PTMSP20962 102 aa10□□□□□ -0.81
RNF4-220ENST00000513578 RPS6KB1P23443 525 aa10□□□□□ -0.81
RNF4-220ENST00000513578 MCM4P33991 863 aa10□□□□□ -0.81
RNF4-220ENST00000513578 AK2P54819 239 aa10□□□□□ -0.81
RNF4-220ENST00000513578 ADCK5Q3MIX3 580 aa10□□□□□ -0.81
RNF4-220ENST00000513578 TMED8Q6PL24 325 aaPredicted RBP10□□□□□ -0.81
RNF4-220ENST00000513578 BICDL1Q6ZP65 573 aa10□□□□□ -0.81
RNF4-220ENST00000513578 PROM2Q8N271 834 aa10□□□□□ -0.81
RNF4-220ENST00000513578 SPATA5Q8NB90 893 aa10□□□□□ -0.81
RNF4-220ENST00000513578 OSBP2Q969R2 916 aa10□□□□□ -0.81
RNF4-220ENST00000513578 PDRG1Q9NUG6 133 aa10□□□□□ -0.81
RNF4-220ENST00000513578 CTNNA3Q9UI47 895 aa10□□□□□ -0.81
RNF4-220ENST00000513578 MINPP1Q9UNW1 487 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms