RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ZNF609O15014 1411 aa18.44■□□□□ 0.54
NUP54-213ENST00000513352 LPIN2Q92539 896 aa18.44■□□□□ 0.54
NUP54-213ENST00000513352 NEUROD6Q96NK8 337 aa18.44■□□□□ 0.54
NUP54-213ENST00000513352 LRRCC1Q9C099 1032 aa18.44■□□□□ 0.54
NUP54-213ENST00000513352 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.44■□□□□ 0.54
NUP54-213ENST00000513352 MED23Q9ULK4 1368 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 A0A1B0GUL7 405 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 SMARCA5O60264 1052 aaPredicted RBP18.43■□□□□ 0.54
NUP54-213ENST00000513352 KIAA2012Q0VF49 1180 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 DOK7Q18PE1 504 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 C9orf131Q5VYM1 1079 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 VPS37DQ86XT2 251 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 NIM1KQ8IY84 436 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 GCC1Q96CN9 775 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 CCDC136Q96JN2 1154 aa18.43■□□□□ 0.54
NUP54-213ENST00000513352 FGFR2P21802 821 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 TIMM10P62072 90 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 TNNI3KQ59H18 835 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 CAVIN4Q5BKX8 364 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 GORABQ5T7V8 394 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 ZNF804AQ7Z570 1209 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 AACSQ86V21 672 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 TXNRD3Q86VQ6 643 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 CLASRPQ8N2M8 674 aaKnown RBP18.42■□□□□ 0.54
NUP54-213ENST00000513352 JDP2Q8WYK2 163 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 DBNDD1Q9H9R9 158 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 FPGT-TNNI3KV9GXZ4 949 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 CHD4Q14839 1912 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 DICER1Q9UPY3 1922 aaKnown RBP18.42■□□□□ 0.54
NUP54-213ENST00000513352 ARAP2Q8WZ64 1704 aa18.42■□□□□ 0.54
NUP54-213ENST00000513352 TIAM2Q8IVF5 1701 aa18.41■□□□□ 0.54
NUP54-213ENST00000513352 GYG1P46976 350 aa18.41■□□□□ 0.54
NUP54-213ENST00000513352 PRELPP51888 382 aa18.41■□□□□ 0.54
NUP54-213ENST00000513352 ANKRD45Q5TZF3 282 aa18.41■□□□□ 0.54
NUP54-213ENST00000513352 ERICH6BQ5W0A0 696 aa18.41■□□□□ 0.54
NUP54-213ENST00000513352 B4GALNT3Q6L9W6 998 aa18.41■□□□□ 0.54
NUP54-213ENST00000513352 VPS33BQ9H267 617 aa18.41■□□□□ 0.54
NUP54-213ENST00000513352 ECE2O60344 883 aa18.4■□□□□ 0.54
NUP54-213ENST00000513352 ADORA1P30542 326 aa18.4■□□□□ 0.54
NUP54-213ENST00000513352 CCDC8Q9H0W5 538 aaPredicted RBP18.4■□□□□ 0.54
NUP54-213ENST00000513352 GPR108Q9NPR9 543 aa18.4■□□□□ 0.54
NUP54-213ENST00000513352 FRAT2O75474 233 aaPredicted RBP18.39■□□□□ 0.53
NUP54-213ENST00000513352 IFIT2P09913 472 aaKnown RBP18.39■□□□□ 0.53
NUP54-213ENST00000513352 HIBADHP31937 336 aaKnown RBP18.39■□□□□ 0.53
NUP54-213ENST00000513352 C15orf52Q6ZUT6 534 aaKnown RBP18.39■□□□□ 0.53
NUP54-213ENST00000513352 FBXW7Q969H0 707 aa18.39■□□□□ 0.53
NUP54-213ENST00000513352 XAGE2Q96GT9 111 aa18.39■□□□□ 0.53
NUP54-213ENST00000513352 PPP4R2Q9NY27 417 aa18.39■□□□□ 0.53
NUP54-213ENST00000513352 COL4A5P29400 1685 aa18.38■□□□□ 0.53
NUP54-213ENST00000513352 BCAMP50895 628 aa18.38■□□□□ 0.53
NUP54-213ENST00000513352 EAF2Q96CJ1 260 aaPredicted RBP18.38■□□□□ 0.53
NUP54-213ENST00000513352 DBNDD2Q9BQY9 259 aa18.38■□□□□ 0.53
NUP54-213ENST00000513352 COA1Q9GZY4 146 aa18.38■□□□□ 0.53
NUP54-213ENST00000513352 TLR7Q9NYK1 1049 aaKnown RBP18.38■□□□□ 0.53
NUP54-213ENST00000513352 MYH13Q9UKX3 1938 aa18.38■□□□□ 0.53
NUP54-213ENST00000513352 SMC5Q8IY18 1101 aa18.37■□□□□ 0.53
NUP54-213ENST00000513352 FAM84BQ96KN1 310 aaPredicted RBP18.37■□□□□ 0.53
NUP54-213ENST00000513352 IQSEC3Q9UPP2 1182 aaPredicted RBP18.37■□□□□ 0.53
NUP54-213ENST00000513352 IRS2Q9Y4H2 1338 aa18.37■□□□□ 0.53
NUP54-213ENST00000513352 PHKA1P46020 1223 aa18.36■□□□□ 0.53
NUP54-213ENST00000513352 EIF6P56537 245 aaKnown RBP18.36■□□□□ 0.53
NUP54-213ENST00000513352 TTC39AQ5SRH9 613 aa18.36■□□□□ 0.53
NUP54-213ENST00000513352 CD209Q9NNX6 404 aa18.36■□□□□ 0.53
NUP54-213ENST00000513352 GNL3LQ9NVN8 582 aaKnown RBP18.36■□□□□ 0.53
NUP54-213ENST00000513352 ZNRF3Q9ULT6 936 aa18.36■□□□□ 0.53
NUP54-213ENST00000513352 CCDC158Q5M9N0 1113 aa18.35■□□□□ 0.53
NUP54-213ENST00000513352 CCDC102BQ68D86 513 aa18.35■□□□□ 0.53
NUP54-213ENST00000513352 FBXO33Q7Z6M2 555 aa18.35■□□□□ 0.53
NUP54-213ENST00000513352 LNPKQ9C0E8 428 aa18.35■□□□□ 0.53
NUP54-213ENST00000513352 DBNLQ9UJU6 430 aaKnown RBP18.35■□□□□ 0.53
NUP54-213ENST00000513352 SCN9AQ15858 1988 aa18.34■□□□□ 0.53
NUP54-213ENST00000513352 RAD17O75943 681 aa18.34■□□□□ 0.53
NUP54-213ENST00000513352 CHAF1AQ13111 956 aaPredicted RBP18.34■□□□□ 0.53
NUP54-213ENST00000513352 CENPQQ7L2Z9 268 aaPredicted RBP18.34■□□□□ 0.53
NUP54-213ENST00000513352 ZNF541Q9H0D2 1346 aa18.33■□□□□ 0.53
NUP54-213ENST00000513352 YDJCA8MPS7 323 aa18.33■□□□□ 0.52
NUP54-213ENST00000513352 NUCB1Q02818 461 aa18.33■□□□□ 0.52
NUP54-213ENST00000513352 PODNQ7Z5L7 613 aa18.33■□□□□ 0.52
NUP54-213ENST00000513352 GPATCH3Q96I76 525 aa18.33■□□□□ 0.52
NUP54-213ENST00000513352 JAG2Q9Y219 1238 aa18.33■□□□□ 0.52
NUP54-213ENST00000513352 GJA3Q9Y6H8 435 aa18.33■□□□□ 0.52
NUP54-213ENST00000513352 IL1R1P14778 569 aa18.32■□□□□ 0.52
NUP54-213ENST00000513352 GTF2IP78347 998 aa18.32■□□□□ 0.52
NUP54-213ENST00000513352 CIAPIN1Q6FI81 312 aa18.32■□□□□ 0.52
NUP54-213ENST00000513352 CHD1LQ86WJ1 897 aa18.32■□□□□ 0.52
NUP54-213ENST00000513352 C16orf71Q8IYS4 520 aaPredicted RBP18.32■□□□□ 0.52
NUP54-213ENST00000513352 KCNQ5Q9NR82 932 aa18.32■□□□□ 0.52
NUP54-213ENST00000513352 KDM2BQ8NHM5 1336 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 USP17L3A6NCW0 530 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 USP17L4A6NCW7 530 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 FZD9O00144 591 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 UQCRFS1P1P0C7P4 283 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 TNIP1Q15025 636 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 TTLL5Q6EMB2 1281 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 USP17L1Q7RTZ2 530 aa18.31■□□□□ 0.52
NUP54-213ENST00000513352 TDRD7Q8NHU6 1098 aaKnown RBP18.31■□□□□ 0.52
NUP54-213ENST00000513352 PSME4Q14997 1843 aa18.3■□□□□ 0.52
NUP54-213ENST00000513352 ZC3H4Q9UPT8 1303 aaKnown RBP18.3■□□□□ 0.52
NUP54-213ENST00000513352 PSMD14O00487 310 aa18.3■□□□□ 0.52
NUP54-213ENST00000513352 CXCL9Q07325 125 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms