RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 ILDR1Q86SU0 546 aaPredicted RBP15.3■□□□□ 0.04
PTPN7-217ENST00000495688 FBXW7Q969H0 707 aa15.3■□□□□ 0.04
PTPN7-217ENST00000495688 CLIP2Q9UDT6 1046 aa15.3■□□□□ 0.04
PTPN7-217ENST00000495688 PALLDQ8WX93 1383 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 A0A1B0GUL7 405 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 PDIA3P30101 505 aaKnown RBP15.29■□□□□ 0.04
PTPN7-217ENST00000495688 SNW1Q13573 536 aaKnown RBP15.29■□□□□ 0.04
PTPN7-217ENST00000495688 IQCB1Q15051 598 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 OTUD7BQ6GQQ9 843 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 LLPHQ9BRT6 129 aaKnown RBP15.29■□□□□ 0.04
PTPN7-217ENST00000495688 HELLSQ9NRZ9 838 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 RCOR1Q9UKL0 485 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 M0R2C6 588 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 HMGB1P09429 215 aaKnown RBP15.29■□□□□ 0.04
PTPN7-217ENST00000495688 IFIT1P09914 478 aaKnown RBP15.29■□□□□ 0.04
PTPN7-217ENST00000495688 HAND2P61296 217 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 CCDC85AQ96PX6 553 aaPredicted RBP15.29■□□□□ 0.04
PTPN7-217ENST00000495688 DSCC1Q9BVC3 393 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 PRDM10Q9NQV6 1147 aa15.29■□□□□ 0.04
PTPN7-217ENST00000495688 CWC25Q9NXE8 425 aaPredicted RBP15.29■□□□□ 0.04
PTPN7-217ENST00000495688 FKBP4Q02790 459 aaKnown RBP eCLIP15.28■□□□□ 0.04
PTPN7-217ENST00000495688 HSP90AB3PQ58FF7 597 aa15.28■□□□□ 0.04
PTPN7-217ENST00000495688 NAA16Q6N069 864 aaPredicted RBP15.28■□□□□ 0.04
PTPN7-217ENST00000495688 OSBP2Q969R2 916 aa15.28■□□□□ 0.04
PTPN7-217ENST00000495688 CCDC94Q9BW85 323 aaPredicted RBP15.28■□□□□ 0.04
PTPN7-217ENST00000495688 AGXT2Q9BYV1 514 aa15.28■□□□□ 0.04
PTPN7-217ENST00000495688 CHAF1AQ13111 956 aaPredicted RBP15.28■□□□□ 0.04
PTPN7-217ENST00000495688 RAB11FIP4Q86YS3 637 aa15.28■□□□□ 0.04
PTPN7-217ENST00000495688 GLI3P10071 1580 aa15.28■□□□□ 0.04
PTPN7-217ENST00000495688 SALL1Q9NSC2 1324 aa15.27■□□□□ 0.04
PTPN7-217ENST00000495688 FDPSP14324 419 aaKnown RBP15.27■□□□□ 0.04
PTPN7-217ENST00000495688 ME1P48163 572 aa15.27■□□□□ 0.04
PTPN7-217ENST00000495688 BCL11BQ9C0K0 894 aaPredicted RBP15.27■□□□□ 0.04
PTPN7-217ENST00000495688 GJB4Q9NTQ9 266 aa15.27■□□□□ 0.04
PTPN7-217ENST00000495688 COL18A1P39060 1754 aa15.27■□□□□ 0.04
PTPN7-217ENST00000495688 EYA2O00167 538 aa15.27■□□□□ 0.03
PTPN7-217ENST00000495688 IL15P40933 162 aaPredicted RBP15.27■□□□□ 0.03
PTPN7-217ENST00000495688 GOLGA6L19H0YKK7 550 aa15.26■□□□□ 0.03
PTPN7-217ENST00000495688 RNF113AO15541 343 aaKnown RBP15.26■□□□□ 0.03
PTPN7-217ENST00000495688 PKNOX2Q96KN3 472 aa15.26■□□□□ 0.03
PTPN7-217ENST00000495688 FOXP2O15409 715 aa15.26■□□□□ 0.03
PTPN7-217ENST00000495688 ATF3P18847 181 aa15.26■□□□□ 0.03
PTPN7-217ENST00000495688 ADORA1P30542 326 aa15.26■□□□□ 0.03
PTPN7-217ENST00000495688 FSIP1Q8NA03 581 aa15.26■□□□□ 0.03
PTPN7-217ENST00000495688 ENGASEQ8NFI3 743 aa15.26■□□□□ 0.03
PTPN7-217ENST00000495688 ZNF330Q9Y3S2 320 aaPredicted RBP15.26■□□□□ 0.03
PTPN7-217ENST00000495688 MYH15Q9Y2K3 1946 aa15.25■□□□□ 0.03
PTPN7-217ENST00000495688 CARMIL3Q8ND23 1372 aa15.25■□□□□ 0.03
PTPN7-217ENST00000495688 PPP4R3BQ5MIZ7 849 aa15.25■□□□□ 0.03
PTPN7-217ENST00000495688 CCDC73Q6ZRK6 1079 aa15.25■□□□□ 0.03
PTPN7-217ENST00000495688 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.25■□□□□ 0.03
PTPN7-217ENST00000495688 KIF1AQ12756 1690 aa15.25■□□□□ 0.03
PTPN7-217ENST00000495688 SCARF1Q14162 830 aa15.25■□□□□ 0.03
PTPN7-217ENST00000495688 PI16Q6UXB8 463 aa15.25■□□□□ 0.03
PTPN7-217ENST00000495688 A0A1B0GVL5 298 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 KINO60870 393 aaKnown RBP15.24■□□□□ 0.03
PTPN7-217ENST00000495688 POLR3DP05423 398 aaPredicted RBP15.24■□□□□ 0.03
PTPN7-217ENST00000495688 STX1AQ16623 288 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 ATP2B3Q16720 1220 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 DHX40Q8IX18 779 aaKnown RBP15.24■□□□□ 0.03
PTPN7-217ENST00000495688 GPR108Q9NPR9 543 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 MST1RQ04912 1400 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 USP27XA6NNY8 438 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 TNNT1P13805 278 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 CBX1P83916 185 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 FAM160A1Q05DH4 1040 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 WASHC4Q2M389 1173 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 PCDHA7Q9UN72 937 aa15.24■□□□□ 0.03
PTPN7-217ENST00000495688 NAA30Q147X3 362 aaPredicted RBP15.23■□□□□ 0.03
PTPN7-217ENST00000495688 FILIP1Q7Z7B0 1213 aa15.23■□□□□ 0.03
PTPN7-217ENST00000495688 ZNF274Q96GC6 653 aaPredicted RBP15.23■□□□□ 0.03
PTPN7-217ENST00000495688 TAOK2Q9UL54 1235 aa15.23■□□□□ 0.03
PTPN7-217ENST00000495688 TJP1Q07157 1748 aa15.23■□□□□ 0.03
PTPN7-217ENST00000495688 BECN2A8MW95 431 aa15.23■□□□□ 0.03
PTPN7-217ENST00000495688 LRRC8AQ8IWT6 810 aa15.23■□□□□ 0.03
PTPN7-217ENST00000495688 CTIFO43310 598 aaKnown RBP15.22■□□□□ 0.03
PTPN7-217ENST00000495688 ZNF396Q96N95 335 aaPredicted RBP15.22■□□□□ 0.03
PTPN7-217ENST00000495688 CLIC4Q9Y696 253 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 TMEM94Q12767 1356 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 SPDYE4A6NLX3 237 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 FGAP02671 866 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 NDUFA8P51970 172 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 TPD52L1Q16890 204 aaPredicted RBP15.22■□□□□ 0.03
PTPN7-217ENST00000495688 GORABQ5T7V8 394 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 SARM1Q6SZW1 724 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 PDCL2Q8N4E4 241 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 AOPEPQ8N6M6 819 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 CCDC191Q8NCU4 936 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 XAGE2Q96GT9 111 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 PUS7LQ9H0K6 701 aaKnown RBP15.22■□□□□ 0.03
PTPN7-217ENST00000495688 CEP126Q9P2H0 1117 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 ADAMTSL3P82987 1691 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 PKD1L3Q7Z443 1732 aa15.22■□□□□ 0.03
PTPN7-217ENST00000495688 CTAGE5O15320 804 aa15.21■□□□□ 0.03
PTPN7-217ENST00000495688 CAVIN2O95810 425 aa15.21■□□□□ 0.03
PTPN7-217ENST00000495688 FMR1NBQ8N0W7 255 aaPredicted RBP15.21■□□□□ 0.03
PTPN7-217ENST00000495688 ZNF592Q92610 1267 aa15.21■□□□□ 0.03
PTPN7-217ENST00000495688 DENND2AQ9ULE3 1009 aa15.21■□□□□ 0.03
PTPN7-217ENST00000495688 LAMB4A4D0S4 1761 aa15.21■□□□□ 0.03
PTPN7-217ENST00000495688 SYNE4Q8N205 404 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms