RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 SYT17Q9BSW7 474 aa23.75■■□□□ 1.39
USP39-218ENST00000493829 PDE1AP54750 535 aa23.74■■□□□ 1.39
USP39-218ENST00000493829 UBE4AQ14139 1066 aa23.74■■□□□ 1.39
USP39-218ENST00000493829 GPATCH3Q96I76 525 aa23.74■■□□□ 1.39
USP39-218ENST00000493829 POLLQ9UGP5 575 aa23.74■■□□□ 1.39
USP39-218ENST00000493829 GOLGB1Q14789 3259 aaKnown RBP23.74■■□□□ 1.39
USP39-218ENST00000493829 TBC1D16Q8TBP0 767 aa23.73■■□□□ 1.39
USP39-218ENST00000493829 ATP2B4P23634 1241 aa23.73■■□□□ 1.39
USP39-218ENST00000493829 GYG1P46976 350 aa23.73■■□□□ 1.39
USP39-218ENST00000493829 ECHDC1Q9NTX5 307 aa23.73■■□□□ 1.39
USP39-218ENST00000493829 PODXL2Q9NZ53 605 aa23.73■■□□□ 1.39
USP39-218ENST00000493829 LEMD3Q9Y2U8 911 aa23.73■■□□□ 1.39
USP39-218ENST00000493829 SRCAPQ6ZRS2 3230 aa23.73■■□□□ 1.39
USP39-218ENST00000493829 CCDC93Q567U6 631 aa23.72■■□□□ 1.39
USP39-218ENST00000493829 PHKA1P46020 1223 aa23.71■■□□□ 1.39
USP39-218ENST00000493829 TTC39AQ5SRH9 613 aa23.71■■□□□ 1.39
USP39-218ENST00000493829 TXNRD3Q86VQ6 643 aa23.71■■□□□ 1.39
USP39-218ENST00000493829 SNED1Q8TER0 1413 aa23.71■■□□□ 1.39
USP39-218ENST00000493829 RIMBP2O15034 1052 aa23.7■■□□□ 1.39
USP39-218ENST00000493829 BCAMP50895 628 aa23.7■■□□□ 1.39
USP39-218ENST00000493829 PELP1Q8IZL8 1130 aaKnown RBP23.7■■□□□ 1.39
USP39-218ENST00000493829 CCDC102BQ68D86 513 aa23.7■■□□□ 1.38
USP39-218ENST00000493829 MAP4K4O95819 1239 aaPredicted RBP23.69■■□□□ 1.38
USP39-218ENST00000493829 CCDC158Q5M9N0 1113 aa23.69■■□□□ 1.38
USP39-218ENST00000493829 VPS37DQ86XT2 251 aa23.69■■□□□ 1.38
USP39-218ENST00000493829 PI4K2BQ8TCG2 481 aa23.69■■□□□ 1.38
USP39-218ENST00000493829 STAP2Q9UGK3 403 aa23.69■■□□□ 1.38
USP39-218ENST00000493829 IQSEC3Q9UPP2 1182 aaPredicted RBP23.69■■□□□ 1.38
USP39-218ENST00000493829 TTC41PQ6P2S7 1318 aa23.69■■□□□ 1.38
USP39-218ENST00000493829 ARFGEF1Q9Y6D6 1849 aa23.69■■□□□ 1.38
USP39-218ENST00000493829 CAVIN4Q5BKX8 364 aa23.68■■□□□ 1.38
USP39-218ENST00000493829 CC2D2BQ6DHV5 1058 aa23.68■■□□□ 1.38
USP39-218ENST00000493829 IRS2Q9Y4H2 1338 aa23.68■■□□□ 1.38
USP39-218ENST00000493829 NDUFB9Q9Y6M9 179 aa23.68■■□□□ 1.38
USP39-218ENST00000493829 TTC22Q5TAA0 569 aa23.67■■□□□ 1.38
USP39-218ENST00000493829 BOLA2Q9H3K6 86 aa23.67■■□□□ 1.38
USP39-218ENST00000493829 MED23Q9ULK4 1368 aa23.67■■□□□ 1.38
USP39-218ENST00000493829 AOX1Q06278 1338 aa23.67■■□□□ 1.38
USP39-218ENST00000493829 GSPT1P15170 499 aaKnown RBP23.67■■□□□ 1.38
USP39-218ENST00000493829 SCARF1Q14162 830 aa23.67■■□□□ 1.38
USP39-218ENST00000493829 ERC2O15083 957 aa23.66■■□□□ 1.38
USP39-218ENST00000493829 SOGA3Q5TF21 947 aa23.66■■□□□ 1.38
USP39-218ENST00000493829 PI16Q6UXB8 463 aa23.66■■□□□ 1.38
USP39-218ENST00000493829 RTKN2Q8IZC4 609 aa23.66■■□□□ 1.38
USP39-218ENST00000493829 FAM84BQ96KN1 310 aaPredicted RBP23.66■■□□□ 1.38
USP39-218ENST00000493829 DNAJC2Q99543 621 aaKnown RBP23.66■■□□□ 1.38
USP39-218ENST00000493829 OSBPL3Q9H4L5 887 aa23.66■■□□□ 1.38
USP39-218ENST00000493829 SNRKQ9NRH2 765 aa23.66■■□□□ 1.38
USP39-218ENST00000493829 GLRX3O76003 335 aaKnown RBP23.65■■□□□ 1.38
USP39-218ENST00000493829 WASHC4Q2M389 1173 aa23.65■■□□□ 1.38
USP39-218ENST00000493829 FER1L6Q2WGJ9 1857 aa23.64■■□□□ 1.38
USP39-218ENST00000493829 ATP5JP18859 108 aa23.64■■□□□ 1.38
USP39-218ENST00000493829 HIBADHP31937 336 aaKnown RBP23.64■■□□□ 1.38
USP39-218ENST00000493829 EYA3Q99504 573 aa23.64■■□□□ 1.38
USP39-218ENST00000493829 MYH13Q9UKX3 1938 aa23.64■■□□□ 1.37
USP39-218ENST00000493829 AOC3Q16853 763 aa23.64■■□□□ 1.37
USP39-218ENST00000493829 ZNF804AQ7Z570 1209 aa23.64■■□□□ 1.37
USP39-218ENST00000493829 ZNF277Q9NRM2 450 aaPredicted RBP23.64■■□□□ 1.37
USP39-218ENST00000493829 COL1A1P02452 1464 aaPredicted RBP23.63■■□□□ 1.37
USP39-218ENST00000493829 TRIM6-TRIM34B2RNG4 842 aa23.63■■□□□ 1.37
USP39-218ENST00000493829 ARID4AP29374 1257 aaPredicted RBP23.63■■□□□ 1.37
USP39-218ENST00000493829 MCAMP43121 646 aa23.63■■□□□ 1.37
USP39-218ENST00000493829 RASGRF1Q13972 1273 aa23.63■■□□□ 1.37
USP39-218ENST00000493829 DOK7Q18PE1 504 aa23.63■■□□□ 1.37
USP39-218ENST00000493829 FBXO33Q7Z6M2 555 aa23.63■■□□□ 1.37
USP39-218ENST00000493829 EDC3Q96F86 508 aaKnown RBP23.63■■□□□ 1.37
USP39-218ENST00000493829 RTFDC1Q9BY42 306 aaPredicted RBP23.63■■□□□ 1.37
USP39-218ENST00000493829 ZC3H12CQ9C0D7 883 aaKnown RBP23.63■■□□□ 1.37
USP39-218ENST00000493829 FRAT2O75474 233 aaPredicted RBP23.62■■□□□ 1.37
USP39-218ENST00000493829 UQCRFS1P1P0C7P4 283 aa23.62■■□□□ 1.37
USP39-218ENST00000493829 FKBP4Q02790 459 aaKnown RBP eCLIP23.62■■□□□ 1.37
USP39-218ENST00000493829 RASSF7Q02833 373 aa23.62■■□□□ 1.37
USP39-218ENST00000493829 C15orf52Q6ZUT6 534 aaKnown RBP23.62■■□□□ 1.37
USP39-218ENST00000493829 SUPT20HQ8NEM7 779 aa23.62■■□□□ 1.37
USP39-218ENST00000493829 JAG2Q9Y219 1238 aa23.62■■□□□ 1.37
USP39-218ENST00000493829 NFKBIEO00221 500 aa23.61■■□□□ 1.37
USP39-218ENST00000493829 PPIP5K2O43314 1243 aa23.61■■□□□ 1.37
USP39-218ENST00000493829 GRIPAP1Q4V328 841 aa23.61■■□□□ 1.37
USP39-218ENST00000493829 RILPL2Q969X0 211 aa23.61■■□□□ 1.37
USP39-218ENST00000493829 PSMD1Q99460 953 aa23.61■■□□□ 1.37
USP39-218ENST00000493829 TAOK3Q9H2K8 898 aa23.61■■□□□ 1.37
USP39-218ENST00000493829 GNL3LQ9NVN8 582 aaKnown RBP23.61■■□□□ 1.37
USP39-218ENST00000493829 G3V3G9 751 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 YBX3P16989 372 aaKnown RBP eCLIP23.6■■□□□ 1.373e-7■□□□□ 10.6
USP39-218ENST00000493829 DCAF8Q5TAQ9 597 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 DBNDD1Q9H9R9 158 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 AKAP11Q9UKA4 1901 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 GOLIM4O00461 696 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 ZAP70P43403 619 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 CHAF1AQ13111 956 aaPredicted RBP23.6■■□□□ 1.37
USP39-218ENST00000493829 HAUS7Q99871 368 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 HMG20BQ9P0W2 317 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 AK9Q5TCS8 1911 aa23.6■■□□□ 1.37
USP39-218ENST00000493829 CD209Q9NNX6 404 aa23.59■■□□□ 1.37
USP39-218ENST00000493829 COL4A5P29400 1685 aa23.58■■□□□ 1.37
USP39-218ENST00000493829 SDSP20132 328 aa23.58■■□□□ 1.37
USP39-218ENST00000493829 BMP2KLQ5H9B9 411 aa23.58■■□□□ 1.37
USP39-218ENST00000493829 ARHGAP27Q6ZUM4 889 aa23.58■■□□□ 1.37
USP39-218ENST00000493829 SPATA5Q8NB90 893 aa23.58■■□□□ 1.37
USP39-218ENST00000493829 ZNF512BQ96KM6 892 aaPredicted RBP23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms