RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 HACL1Q9UJ83 578 aa20.27■□□□□ 0.84
MSH5-SAPCD1-206ENST00000491552 DDX19BQ9UMR2 479 aa20.27■□□□□ 0.84
MSH5-SAPCD1-206ENST00000491552 PA2G4Q9UQ80 394 aaKnown RBP20.27■□□□□ 0.84
MSH5-SAPCD1-206ENST00000491552 TOMM70O94826 608 aa20.26■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 LMOD1P29536 600 aaPredicted RBP20.26■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 SCNN1DP51172 638 aa20.26■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 C20orf194Q5TEA3 1177 aa20.26■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 ATG9AQ7Z3C6 839 aa20.26■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 KCNQ5Q9NR82 932 aa20.26■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 SCN9AQ15858 1988 aa20.26■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 PSME4Q14997 1843 aa20.25■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 PNMA6EA0A0J9YXQ4 647 aa20.25■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 PDE8BO95263 885 aa20.25■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 GMPSP49915 693 aaPredicted RBP20.25■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 TAF1DQ9H5J8 278 aaPredicted RBP20.25■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 EPHX2P34913 555 aa20.24■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 IL15P40933 162 aaPredicted RBP20.24■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 ZNF804AQ7Z570 1209 aa20.24■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 RBM46Q8TBY0 533 aaKnown RBP20.24■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 CHMP4BQ9H444 224 aaKnown RBP20.24■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 VIL1P09327 827 aaKnown RBP20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 RRP1P56182 461 aaKnown RBP20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 C1QTNF8P60827 252 aa20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 ATP8B2P98198 1209 aa20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 PUM3Q15397 648 aaKnown RBP20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 CD209Q9NNX6 404 aa20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 GPRC5DQ9NZD1 345 aa20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 ZBTB12Q9Y330 459 aaPredicted RBP20.23■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 USP17L3A6NCW0 530 aa20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 USP17L4A6NCW7 530 aa20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 RPS12P25398 132 aaKnown RBP20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 EPS15P42566 896 aa20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 POLA2Q14181 598 aa20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 USP17L1Q7RTZ2 530 aa20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 SSH3Q8TE77 659 aa20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 CEP126Q9P2H0 1117 aa20.22■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 ZNF609O15014 1411 aa20.21■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 FGFR2P21802 821 aa20.21■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 CEP85Q6P2H3 762 aa20.21■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 RSBN1LQ6PCB5 846 aaPredicted RBP20.21■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 DPF2Q92785 391 aa20.21■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 FBXW7Q969H0 707 aa20.21■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 ZBTB40Q9NUA8 1239 aa20.21■□□□□ 0.83
MSH5-SAPCD1-206ENST00000491552 ZNF646O15015 1829 aaPredicted RBP20.2■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 IFIT1P09914 478 aaKnown RBP20.2■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 SLC5A1P13866 664 aa20.2■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 IL1R1P14778 569 aa20.2■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 EAPPQ56P03 285 aaPredicted RBP20.2■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 PNMA8AQ86V59 439 aaPredicted RBP20.2■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 ADARB2Q9NS39 739 aaKnown RBP20.2■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 POTEIP0CG38 1075 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 POTEJP0CG39 1038 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 HIBADHP31937 336 aaKnown RBP20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 GYG1P46976 350 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 STRIP1Q5VSL9 837 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 MICALL2Q8IY33 904 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 SMC1BQ8NDV3 1235 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 AGBL3Q8NEM8 1001 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 LPIN2Q92539 896 aa20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 FAM84BQ96KN1 310 aaPredicted RBP20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 CNOT7Q9UIV1 285 aaKnown RBP20.19■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 ADAMTSL1Q8N6G6 1762 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 GTF2IP78347 998 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 FSTL1Q12841 308 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 G3BP1Q13283 466 aaKnown RBP eCLIP20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 ATP2B3Q16720 1220 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 CAVIN4Q5BKX8 364 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 DACT2Q5SW24 774 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 TTLL5Q6EMB2 1281 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 USP50Q70EL3 339 aaPredicted RBP20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 LDHDQ86WU2 507 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 VPS37DQ86XT2 251 aa20.18■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 SHTN1A0MZ66 631 aa20.17■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 H7C1D1 291 aa20.17■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 FBXO33Q7Z6M2 555 aa20.17■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 MYO3BQ8WXR4 1341 aa20.17■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 TFCP2Q12800 502 aa20.16■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 CHADLQ6NUI6 762 aa20.16■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 TDRD7Q8NHU6 1098 aaKnown RBP20.16■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 GMLQ99445 158 aa20.16■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 MXD3Q9BW11 206 aa20.16■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 ARAP2Q8WZ64 1704 aa20.16■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 SURF6O75683 361 aaKnown RBP20.15■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 RPAP2Q8IXW5 612 aaPredicted RBP20.15■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 CLEC11AQ9Y240 323 aa20.15■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 AKAP2Q9Y2D5 859 aa20.15■□□□□ 0.82
MSH5-SAPCD1-206ENST00000491552 BCAMP50895 628 aa20.14■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 OS9Q13438 667 aaPredicted RBP20.14■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 TRPM4Q8TD43 1214 aa20.14■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 NOP58Q9Y2X3 529 aaKnown RBP20.14■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 FAM205AQ6ZU69 1335 aa20.13■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 SASH1O94885 1247 aa20.13■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 USP17L8P0C7I0 530 aa20.13■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 ZNF280AP59817 542 aaPredicted RBP20.13■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 A0A1B0GUL7 405 aa20.12■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 HMMRO75330 724 aa20.12■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 FRAT2O75474 233 aaPredicted RBP20.12■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 FKBP1AP62942 108 aaKnown RBP20.12■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 TBC1D10BQ4KMP7 808 aaPredicted RBP20.12■□□□□ 0.81
MSH5-SAPCD1-206ENST00000491552 SAMD7Q7Z3H4 446 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms