RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 MICALL2Q8IY33 904 aa21.33■■□□□ 1.01
VIM-205ENST00000485947 MKRN1Q9UHC7 482 aaKnown RBP21.33■■□□□ 1.01
VIM-205ENST00000485947 CCDC57Q2TAC2 916 aa21.32■■□□□ 1
VIM-205ENST00000485947 CRBNQ96SW2 442 aa21.32■■□□□ 1
VIM-205ENST00000485947 COA1Q9GZY4 146 aa21.32■■□□□ 1
VIM-205ENST00000485947 LMBR1LQ6UX01 489 aa21.31■■□□□ 1
VIM-205ENST00000485947 CNTNAP1P78357 1384 aa21.31■■□□□ 1
VIM-205ENST00000485947 ZNF804BA4D1E1 1349 aa21.3■■□□□ 1
VIM-205ENST00000485947 USP17L3A6NCW0 530 aa21.3■■□□□ 1
VIM-205ENST00000485947 USP17L4A6NCW7 530 aa21.3■■□□□ 1
VIM-205ENST00000485947 AAMPQ13685 434 aa21.3■■□□□ 1
VIM-205ENST00000485947 RSBN1LQ6PCB5 846 aaPredicted RBP21.3■■□□□ 1
VIM-205ENST00000485947 C15orf52Q6ZUT6 534 aaKnown RBP21.3■■□□□ 1
VIM-205ENST00000485947 CDC37L1Q7L3B6 337 aa21.3■■□□□ 1
VIM-205ENST00000485947 USP17L1Q7RTZ2 530 aa21.3■■□□□ 1
VIM-205ENST00000485947 EXOC6Q8TAG9 804 aa21.3■■□□□ 1
VIM-205ENST00000485947 PANK1Q8TE04 598 aa21.3■■□□□ 1
VIM-205ENST00000485947 GPR101Q96P66 508 aaPredicted RBP21.3■■□□□ 1
VIM-205ENST00000485947 PCDH10Q9P2E7 1040 aa21.3■■□□□ 1
VIM-205ENST00000485947 ZBTB12Q9Y330 459 aaPredicted RBP21.3■■□□□ 1
VIM-205ENST00000485947 RLBP1P12271 317 aa21.29■■□□□ 1
VIM-205ENST00000485947 MVPQ14764 893 aaKnown RBP21.29■■□□□ 1
VIM-205ENST00000485947 CLUAP1Q96AJ1 413 aa21.29■■□□□ 1
VIM-205ENST00000485947 TNNQ9UQP3 1299 aa21.29■■□□□ 1
VIM-205ENST00000485947 MYO3BQ8WXR4 1341 aa21.29■■□□□ 1
VIM-205ENST00000485947 RASSF10A6NK89 507 aa21.28■■□□□ 1
VIM-205ENST00000485947 HIRAP54198 1017 aaPredicted RBP21.28■■□□□ 1
VIM-205ENST00000485947 CHRNDQ07001 517 aa21.28■■□□□ 1
VIM-205ENST00000485947 KCNQ5Q9NR82 932 aa21.28■■□□□ 1
VIM-205ENST00000485947 PPP4R2Q9NY27 417 aa21.28■■□□□ 1
VIM-205ENST00000485947 KCNJ4P48050 445 aa21.27■■□□□ 1
VIM-205ENST00000485947 CTCFP49711 727 aaPredicted RBP21.27■■□□□ 1
VIM-205ENST00000485947 ZNF280AP59817 542 aaPredicted RBP21.27■■□□□ 1
VIM-205ENST00000485947 TAF7LQ5H9L4 462 aa21.27■■□□□ 1
VIM-205ENST00000485947 STRIP1Q5VSL9 837 aa21.27■■□□□ 1
VIM-205ENST00000485947 TRPM4Q8TD43 1214 aa21.27■■□□□ 1
VIM-205ENST00000485947 GMLQ99445 158 aa21.27■■□□□ 1
VIM-205ENST00000485947 DDX19BQ9UMR2 479 aa21.27■■□□□ 1
VIM-205ENST00000485947 COG6Q9Y2V7 657 aa21.27■■□□□ 1
VIM-205ENST00000485947 CHMP3Q9Y3E7 222 aa21.27■■□□□ 1
VIM-205ENST00000485947 DEFB115Q30KQ5 88 aa21.26■□□□□ 0.99
VIM-205ENST00000485947 RABL6Q3YEC7 729 aaPredicted RBP21.26■□□□□ 0.99
VIM-205ENST00000485947 EPHA10Q5JZY3 1008 aa21.26■□□□□ 0.99
VIM-205ENST00000485947 LDHAL6AQ6ZMR3 332 aa21.26■□□□□ 0.99
VIM-205ENST00000485947 CHMP4BQ9H444 224 aaKnown RBP21.26■□□□□ 0.99
VIM-205ENST00000485947 HDAC5Q9UQL6 1122 aa21.26■□□□□ 0.99
VIM-205ENST00000485947 NBPF7P0C2Y1 421 aaPredicted RBP21.25■□□□□ 0.99
VIM-205ENST00000485947 USP17L8P0C7I0 530 aa21.25■□□□□ 0.99
VIM-205ENST00000485947 TMEM57Q8N5G2 664 aa21.25■□□□□ 0.99
VIM-205ENST00000485947 KIF4BQ2VIQ3 1234 aa21.24■□□□□ 0.99
VIM-205ENST00000485947 INTS3Q68E01 1043 aaKnown RBP21.24■□□□□ 0.99
VIM-205ENST00000485947 SAMD7Q7Z3H4 446 aa21.24■□□□□ 0.99
VIM-205ENST00000485947 HHIPL1Q96JK4 782 aa21.24■□□□□ 0.99
VIM-205ENST00000485947 ITPRIPQ8IWB1 547 aa21.23■□□□□ 0.99
VIM-205ENST00000485947 DCPSQ96C86 337 aaKnown RBP21.23■□□□□ 0.99
VIM-205ENST00000485947 KAZALD1Q96I82 304 aa21.23■□□□□ 0.99
VIM-205ENST00000485947 SUCLG2Q96I99 432 aa21.23■□□□□ 0.99
VIM-205ENST00000485947 CNNM1Q9NRU3 951 aa21.23■□□□□ 0.99
VIM-205ENST00000485947 ABT1Q9ULW3 272 aaKnown RBP21.23■□□□□ 0.99
VIM-205ENST00000485947 SCN9AQ15858 1988 aa21.23■□□□□ 0.99
VIM-205ENST00000485947 SHTN1A0MZ66 631 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 ECE1P42892 770 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 TBC1D10BQ4KMP7 808 aaPredicted RBP21.22■□□□□ 0.99
VIM-205ENST00000485947 DACT2Q5SW24 774 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 CST9Q5W186 159 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 OGFOD1Q8N543 542 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 ABHD8Q96I13 439 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 USP44Q9H0E7 712 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 WBP1LQ9NX94 342 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 TLL2Q9Y6L7 1015 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 PSME4Q14997 1843 aa21.22■□□□□ 0.99
VIM-205ENST00000485947 WTIPA6NIX2 430 aaPredicted RBP21.21■□□□□ 0.99
VIM-205ENST00000485947 TRAF5O00463 557 aa21.21■□□□□ 0.99
VIM-205ENST00000485947 UBE4AQ14139 1066 aa21.21■□□□□ 0.99
VIM-205ENST00000485947 TXNRD3Q86VQ6 643 aa21.21■□□□□ 0.99
VIM-205ENST00000485947 AIDAQ96BJ3 306 aa21.21■□□□□ 0.99
VIM-205ENST00000485947 GLIS2Q9BZE0 524 aaPredicted RBP21.21■□□□□ 0.99
VIM-205ENST00000485947 CD209Q9NNX6 404 aa21.21■□□□□ 0.99
VIM-205ENST00000485947 MROH5Q6ZUA9 1318 aa21.21■□□□□ 0.99
VIM-205ENST00000485947 VEGFBP49765 207 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 LBX1P52954 281 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 TTLL5Q6EMB2 1281 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 KRT26Q7Z3Y9 468 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 ZNF804AQ7Z570 1209 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 BICC1Q9H694 974 aaKnown RBP21.2■□□□□ 0.98
VIM-205ENST00000485947 MYOZ2Q9NPC6 264 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 PITPNM2Q9BZ72 1349 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 IRS2Q9Y4H2 1338 aa21.2■□□□□ 0.98
VIM-205ENST00000485947 CELF2O95319 508 aaKnown RBP21.19■□□□□ 0.98
VIM-205ENST00000485947 IL1R1P14778 569 aa21.19■□□□□ 0.98
VIM-205ENST00000485947 FKBP1AP62942 108 aaKnown RBP21.19■□□□□ 0.98
VIM-205ENST00000485947 SULF1Q8IWU6 871 aa21.19■□□□□ 0.98
VIM-205ENST00000485947 SPEF2Q9C093 1822 aa21.19■□□□□ 0.98
VIM-205ENST00000485947 TAF5LO75529 589 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 EGFRP00533 1210 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 RBM26Q5T8P6 1007 aaKnown RBP21.18■□□□□ 0.98
VIM-205ENST00000485947 SAPCD2Q86UD0 394 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 USP48Q86UV5 1035 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 ANKRD44Q8N8A2 993 aa21.18■□□□□ 0.98
VIM-205ENST00000485947 ZNF594Q96JF6 807 aaPredicted RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 298.6 ms