RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PLIN1O60240 522 aa19.8■□□□□ 0.76
UPF3A-208ENST00000484246 PDE8BO95263 885 aa19.8■□□□□ 0.76
UPF3A-208ENST00000484246 KLRK1P26718 216 aa19.8■□□□□ 0.76
UPF3A-208ENST00000484246 METTL24Q5JXM2 366 aa19.8■□□□□ 0.76
UPF3A-208ENST00000484246 ATG9AQ7Z3C6 839 aa19.8■□□□□ 0.76
UPF3A-208ENST00000484246 TXNRD3Q86VQ6 643 aa19.8■□□□□ 0.76
UPF3A-208ENST00000484246 HELBQ8NG08 1087 aaPredicted RBP19.8■□□□□ 0.76
UPF3A-208ENST00000484246 RBM46Q8TBY0 533 aaKnown RBP19.8■□□□□ 0.76
UPF3A-208ENST00000484246 TAF1DQ9H5J8 278 aaPredicted RBP19.8■□□□□ 0.76
UPF3A-208ENST00000484246 HACL1Q9UJ83 578 aa19.8■□□□□ 0.76
UPF3A-208ENST00000484246 RAD17O75943 681 aa19.79■□□□□ 0.76
UPF3A-208ENST00000484246 VIL1P09327 827 aaKnown RBP19.79■□□□□ 0.76
UPF3A-208ENST00000484246 RPS12P25398 132 aaKnown RBP19.79■□□□□ 0.76
UPF3A-208ENST00000484246 CHMP4BQ9H444 224 aaKnown RBP19.79■□□□□ 0.76
UPF3A-208ENST00000484246 GJA3Q9Y6H8 435 aa19.79■□□□□ 0.76
UPF3A-208ENST00000484246 SCN4AP35499 1836 aa19.79■□□□□ 0.76
UPF3A-208ENST00000484246 SNAP23O00161 211 aa19.78■□□□□ 0.76
UPF3A-208ENST00000484246 PSMD14O00487 310 aa19.78■□□□□ 0.76
UPF3A-208ENST00000484246 FGFR2P21802 821 aa19.78■□□□□ 0.76
UPF3A-208ENST00000484246 IL15P40933 162 aaPredicted RBP19.78■□□□□ 0.76
UPF3A-208ENST00000484246 POLA2Q14181 598 aa19.78■□□□□ 0.76
UPF3A-208ENST00000484246 SSH3Q8TE77 659 aa19.78■□□□□ 0.76
UPF3A-208ENST00000484246 DPF2Q92785 391 aa19.78■□□□□ 0.76
UPF3A-208ENST00000484246 GPRC5DQ9NZD1 345 aa19.78■□□□□ 0.76
UPF3A-208ENST00000484246 PNMA6EA0A0J9YXQ4 647 aa19.77■□□□□ 0.76
UPF3A-208ENST00000484246 G3V3G9 751 aa19.77■□□□□ 0.76
UPF3A-208ENST00000484246 GMPSP49915 693 aaPredicted RBP19.77■□□□□ 0.76
UPF3A-208ENST00000484246 PUM3Q15397 648 aaKnown RBP19.77■□□□□ 0.76
UPF3A-208ENST00000484246 DCAF8Q5TAQ9 597 aa19.77■□□□□ 0.76
UPF3A-208ENST00000484246 C16orf71Q8IYS4 520 aaPredicted RBP19.77■□□□□ 0.76
UPF3A-208ENST00000484246 ZBTB40Q9NUA8 1239 aa19.77■□□□□ 0.76
UPF3A-208ENST00000484246 COG6Q9Y2V7 657 aa19.77■□□□□ 0.76
UPF3A-208ENST00000484246 IL1R1P14778 569 aa19.76■□□□□ 0.75
UPF3A-208ENST00000484246 LMOD1P29536 600 aaPredicted RBP19.76■□□□□ 0.75
UPF3A-208ENST00000484246 EPHX2P34913 555 aa19.76■□□□□ 0.75
UPF3A-208ENST00000484246 RRP1P56182 461 aaKnown RBP19.76■□□□□ 0.75
UPF3A-208ENST00000484246 ATP8B2P98198 1209 aa19.76■□□□□ 0.75
UPF3A-208ENST00000484246 ZNF804AQ7Z570 1209 aa19.76■□□□□ 0.75
UPF3A-208ENST00000484246 CD209Q9NNX6 404 aa19.76■□□□□ 0.75
UPF3A-208ENST00000484246 PA2G4Q9UQ80 394 aaKnown RBP19.76■□□□□ 0.75
UPF3A-208ENST00000484246 USP17L3A6NCW0 530 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 USP17L4A6NCW7 530 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 FSTL1Q12841 308 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 C20orf194Q5TEA3 1177 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 STRIP1Q5VSL9 837 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 CEP85Q6P2H3 762 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 USP17L1Q7RTZ2 530 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 PNMA8AQ86V59 439 aaPredicted RBP19.75■□□□□ 0.75
UPF3A-208ENST00000484246 KCNQ5Q9NR82 932 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 ADAMTSL1Q8N6G6 1762 aa19.75■□□□□ 0.75
UPF3A-208ENST00000484246 ZBTB22O15209 634 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 DACT2Q5SW24 774 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 RSBN1LQ6PCB5 846 aaPredicted RBP19.74■□□□□ 0.75
UPF3A-208ENST00000484246 LDHDQ86WU2 507 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 AGBL3Q8NEM8 1001 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 LPIN2Q92539 896 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 GMLQ99445 158 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 SIL1Q9H173 461 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 C1orf115Q9H7X2 142 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 ADARB2Q9NS39 739 aaKnown RBP19.74■□□□□ 0.75
UPF3A-208ENST00000484246 MYO3BQ8WXR4 1341 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 SCN9AQ15858 1988 aa19.74■□□□□ 0.75
UPF3A-208ENST00000484246 EPS15P42566 896 aa19.73■□□□□ 0.75
UPF3A-208ENST00000484246 USP50Q70EL3 339 aaPredicted RBP19.73■□□□□ 0.75
UPF3A-208ENST00000484246 FBXO33Q7Z6M2 555 aa19.73■□□□□ 0.75
UPF3A-208ENST00000484246 SMC1BQ8NDV3 1235 aa19.73■□□□□ 0.75
UPF3A-208ENST00000484246 FAM84BQ96KN1 310 aaPredicted RBP19.73■□□□□ 0.75
UPF3A-208ENST00000484246 CEP126Q9P2H0 1117 aa19.73■□□□□ 0.75
UPF3A-208ENST00000484246 PSME4Q14997 1843 aa19.72■□□□□ 0.75
UPF3A-208ENST00000484246 IFIT1P09914 478 aaKnown RBP19.72■□□□□ 0.75
UPF3A-208ENST00000484246 MMP14P50281 582 aa19.72■□□□□ 0.75
UPF3A-208ENST00000484246 FKBP1AP62942 108 aaKnown RBP19.72■□□□□ 0.75
UPF3A-208ENST00000484246 TDRD7Q8NHU6 1098 aaKnown RBP19.72■□□□□ 0.75
UPF3A-208ENST00000484246 NOP58Q9Y2X3 529 aaKnown RBP19.72■□□□□ 0.75
UPF3A-208ENST00000484246 ZBTB12Q9Y330 459 aaPredicted RBP19.72■□□□□ 0.75
UPF3A-208ENST00000484246 SLC5A1P13866 664 aa19.71■□□□□ 0.75
UPF3A-208ENST00000484246 HIBADHP31937 336 aaKnown RBP19.71■□□□□ 0.75
UPF3A-208ENST00000484246 ZNF280AP59817 542 aaPredicted RBP19.71■□□□□ 0.75
UPF3A-208ENST00000484246 ZNF646O15015 1829 aaPredicted RBP19.71■□□□□ 0.75
UPF3A-208ENST00000484246 FAM205AQ6ZU69 1335 aa19.71■□□□□ 0.75
UPF3A-208ENST00000484246 ATP2B3Q16720 1220 aa19.7■□□□□ 0.74
UPF3A-208ENST00000484246 RPAP2Q8IXW5 612 aaPredicted RBP19.7■□□□□ 0.74
UPF3A-208ENST00000484246 MICALL2Q8IY33 904 aa19.7■□□□□ 0.74
UPF3A-208ENST00000484246 CNOT7Q9UIV1 285 aaKnown RBP19.7■□□□□ 0.74
UPF3A-208ENST00000484246 H7C1D1 291 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 SASH1O94885 1247 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 POTEIP0CG38 1075 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 POTEJP0CG39 1038 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 GYG1P46976 350 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 CAVIN4Q5BKX8 364 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 TTLL5Q6EMB2 1281 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 CHADLQ6NUI6 762 aa19.69■□□□□ 0.74
UPF3A-208ENST00000484246 GTF2IP78347 998 aa19.68■□□□□ 0.74
UPF3A-208ENST00000484246 ZC3H15Q8WU90 426 aaKnown RBP19.68■□□□□ 0.74
UPF3A-208ENST00000484246 PGAP2Q9UHJ9 254 aa19.68■□□□□ 0.74
UPF3A-208ENST00000484246 AKAP2Q9Y2D5 859 aa19.68■□□□□ 0.74
UPF3A-208ENST00000484246 G3BP1Q13283 466 aaKnown RBP eCLIP19.67■□□□□ 0.74
UPF3A-208ENST00000484246 GPR108Q9NPR9 543 aa19.67■□□□□ 0.74
UPF3A-208ENST00000484246 SHTN1A0MZ66 631 aa19.66■□□□□ 0.74
UPF3A-208ENST00000484246 HMMRO75330 724 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms