RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 USP50Q70EL3 339 aaPredicted RBP19.5■□□□□ 0.71
HMGA1-206ENST00000478214 MICALL2Q8IY33 904 aa19.5■□□□□ 0.71
HMGA1-206ENST00000478214 DZIP1LQ8IYY4 767 aaKnown RBP19.5■□□□□ 0.71
HMGA1-206ENST00000478214 SCN9AQ15858 1988 aa19.5■□□□□ 0.71
HMGA1-206ENST00000478214 CEP350Q5VT06 3117 aa19.49■□□□□ 0.71
HMGA1-206ENST00000478214 USP17L3A6NCW0 530 aa19.49■□□□□ 0.71
HMGA1-206ENST00000478214 USP17L4A6NCW7 530 aa19.49■□□□□ 0.71
HMGA1-206ENST00000478214 RLBP1P12271 317 aa19.49■□□□□ 0.71
HMGA1-206ENST00000478214 RPS12P25398 132 aaKnown RBP19.49■□□□□ 0.71
HMGA1-206ENST00000478214 PTPN12Q05209 780 aaKnown RBP19.49■□□□□ 0.71
HMGA1-206ENST00000478214 USP17L1Q7RTZ2 530 aa19.49■□□□□ 0.71
HMGA1-206ENST00000478214 FTSJ3Q8IY81 847 aaKnown RBP19.49■□□□□ 0.71
HMGA1-206ENST00000478214 MROH5Q6ZUA9 1318 aa19.49■□□□□ 0.71
HMGA1-206ENST00000478214 H7C1D1 291 aa19.48■□□□□ 0.71
HMGA1-206ENST00000478214 METTL24Q5JXM2 366 aa19.48■□□□□ 0.71
HMGA1-206ENST00000478214 MAP1SQ66K74 1059 aaPredicted RBP19.48■□□□□ 0.71
HMGA1-206ENST00000478214 RSBN1LQ6PCB5 846 aaPredicted RBP19.48■□□□□ 0.71
HMGA1-206ENST00000478214 TRPM4Q8TD43 1214 aa19.48■□□□□ 0.71
HMGA1-206ENST00000478214 EYA2O00167 538 aa19.47■□□□□ 0.71
HMGA1-206ENST00000478214 APLP1P51693 650 aa19.47■□□□□ 0.71
HMGA1-206ENST00000478214 HIRAP54198 1017 aaPredicted RBP19.47■□□□□ 0.71
HMGA1-206ENST00000478214 UBE4AQ14139 1066 aa19.47■□□□□ 0.71
HMGA1-206ENST00000478214 FBXW7Q969H0 707 aa19.47■□□□□ 0.71
HMGA1-206ENST00000478214 CD209Q9NNX6 404 aa19.47■□□□□ 0.71
HMGA1-206ENST00000478214 RCAN3Q9UKA8 241 aa19.47■□□□□ 0.71
HMGA1-206ENST00000478214 ADAMTSL1Q8N6G6 1762 aa19.47■□□□□ 0.71
HMGA1-206ENST00000478214 GNAI2P04899 355 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 HTRA3P83110 453 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 DACT2Q5SW24 774 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 SAMD7Q7Z3H4 446 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 VGLL2Q8N8G2 317 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 AGBL3Q8NEM8 1001 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 GMLQ99445 158 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 MXD3Q9BW11 206 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 SIL1Q9H173 461 aa19.46■□□□□ 0.71
HMGA1-206ENST00000478214 A0A1B0GUL6 1792 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 PDE8BO95263 885 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 ITGBL1O95965 494 aaPredicted RBP19.45■□□□□ 0.7
HMGA1-206ENST00000478214 EGFRP00533 1210 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 TBC1D10BQ4KMP7 808 aaPredicted RBP19.45■□□□□ 0.7
HMGA1-206ENST00000478214 STRIP1Q5VSL9 837 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 ATG9AQ7Z3C6 839 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 ZNF804AQ7Z570 1209 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 ITPRIPQ8IWB1 547 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 CNTROBQ8N137 903 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 PANK1Q8TE04 598 aa19.45■□□□□ 0.7
HMGA1-206ENST00000478214 PA2G4Q9UQ80 394 aaKnown RBP19.45■□□□□ 0.7
HMGA1-206ENST00000478214 SRGAP3O43295 1099 aa19.44■□□□□ 0.7
HMGA1-206ENST00000478214 GYG1P46976 350 aa19.44■□□□□ 0.7
HMGA1-206ENST00000478214 GTF2IP78347 998 aa19.44■□□□□ 0.7
HMGA1-206ENST00000478214 MTX1Q13505 466 aa19.44■□□□□ 0.7
HMGA1-206ENST00000478214 RBM26Q5T8P6 1007 aaKnown RBP19.44■□□□□ 0.7
HMGA1-206ENST00000478214 TTLL5Q6EMB2 1281 aa19.44■□□□□ 0.7
HMGA1-206ENST00000478214 YTHDC1Q96MU7 727 aaKnown RBP19.44■□□□□ 0.7
HMGA1-206ENST00000478214 ZNF609O15014 1411 aa19.43■□□□□ 0.7
HMGA1-206ENST00000478214 FAM84BQ96KN1 310 aaPredicted RBP19.43■□□□□ 0.7
HMGA1-206ENST00000478214 COPRSQ9NQ92 184 aa19.43■□□□□ 0.7
HMGA1-206ENST00000478214 PASKQ96RG2 1323 aa19.43■□□□□ 0.7
HMGA1-206ENST00000478214 ZBTB7BO15156 539 aaPredicted RBP19.42■□□□□ 0.7
HMGA1-206ENST00000478214 CIAO1O76071 339 aa19.42■□□□□ 0.7
HMGA1-206ENST00000478214 USP17L8P0C7I0 530 aa19.42■□□□□ 0.7
HMGA1-206ENST00000478214 IL1R1P14778 569 aa19.42■□□□□ 0.7
HMGA1-206ENST00000478214 ZNF280AP59817 542 aaPredicted RBP19.42■□□□□ 0.7
HMGA1-206ENST00000478214 FBXO3Q9UK99 471 aa19.42■□□□□ 0.7
HMGA1-206ENST00000478214 FGFR2P21802 821 aa19.41■□□□□ 0.7
HMGA1-206ENST00000478214 HIBADHP31937 336 aaKnown RBP19.41■□□□□ 0.7
HMGA1-206ENST00000478214 C1orf115Q9H7X2 142 aa19.41■□□□□ 0.7
HMGA1-206ENST00000478214 PGAP2Q9UHJ9 254 aa19.41■□□□□ 0.7
HMGA1-206ENST00000478214 PSME4Q14997 1843 aa19.4■□□□□ 0.7
HMGA1-206ENST00000478214 PNMA6EA0A0J9YXQ4 647 aa19.4■□□□□ 0.7
HMGA1-206ENST00000478214 FMR1Q06787 632 aaKnown RBP eCLIP19.4■□□□□ 0.7
HMGA1-206ENST00000478214 PUM3Q15397 648 aaKnown RBP19.4■□□□□ 0.7
HMGA1-206ENST00000478214 KIF4BQ2VIQ3 1234 aa19.4■□□□□ 0.7
HMGA1-206ENST00000478214 FBXO33Q7Z6M2 555 aa19.4■□□□□ 0.7
HMGA1-206ENST00000478214 ZC3H15Q8WU90 426 aaKnown RBP19.4■□□□□ 0.7
HMGA1-206ENST00000478214 CEP126Q9P2H0 1117 aa19.4■□□□□ 0.7
HMGA1-206ENST00000478214 JAG2Q9Y219 1238 aa19.4■□□□□ 0.7
HMGA1-206ENST00000478214 MYO3BQ8WXR4 1341 aa19.4■□□□□ 0.7
HMGA1-206ENST00000478214 TRAF5O00463 557 aa19.39■□□□□ 0.69
HMGA1-206ENST00000478214 MS4A1P11836 297 aa19.39■□□□□ 0.69
HMGA1-206ENST00000478214 IL15P40933 162 aaPredicted RBP19.39■□□□□ 0.69
HMGA1-206ENST00000478214 CERS5Q8N5B7 392 aa19.39■□□□□ 0.69
HMGA1-206ENST00000478214 TDRD7Q8NHU6 1098 aaKnown RBP19.39■□□□□ 0.69
HMGA1-206ENST00000478214 GLIS2Q9BZE0 524 aaPredicted RBP19.39■□□□□ 0.69
HMGA1-206ENST00000478214 MYOZ2Q9NPC6 264 aa19.39■□□□□ 0.69
HMGA1-206ENST00000478214 SASH1O94885 1247 aa19.38■□□□□ 0.69
HMGA1-206ENST00000478214 IFIT1P09914 478 aaKnown RBP19.38■□□□□ 0.69
HMGA1-206ENST00000478214 VPS37DQ86XT2 251 aa19.38■□□□□ 0.69
HMGA1-206ENST00000478214 KIAA0825Q8IV33 1275 aa19.38■□□□□ 0.69
HMGA1-206ENST00000478214 DNAJC5GQ8N7S2 189 aa19.38■□□□□ 0.69
HMGA1-206ENST00000478214 ASTN2O75129 1339 aaPredicted RBP19.37■□□□□ 0.69
HMGA1-206ENST00000478214 SLC5A1P13866 664 aa19.37■□□□□ 0.69
HMGA1-206ENST00000478214 BCAMP50895 628 aa19.37■□□□□ 0.69
HMGA1-206ENST00000478214 CAVIN4Q5BKX8 364 aa19.37■□□□□ 0.69
HMGA1-206ENST00000478214 OGFOD1Q8N543 542 aa19.37■□□□□ 0.69
HMGA1-206ENST00000478214 LPIN2Q92539 896 aa19.37■□□□□ 0.69
HMGA1-206ENST00000478214 IQSEC3Q9UPP2 1182 aaPredicted RBP19.37■□□□□ 0.69
HMGA1-206ENST00000478214 ZNF646O15015 1829 aaPredicted RBP19.37■□□□□ 0.69
HMGA1-206ENST00000478214 FAM205AQ6ZU69 1335 aa19.36■□□□□ 0.69
HMGA1-206ENST00000478214 ATP8B2P98198 1209 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 178.8 ms