RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 DZIP1LQ8IYY4 767 aaKnown RBP17.76■□□□□ 0.43
VAMP4-203ENST00000474047 DPF2Q92785 391 aa17.76■□□□□ 0.43
VAMP4-203ENST00000474047 SNAP23O00161 211 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 VIL1P09327 827 aaKnown RBP17.75■□□□□ 0.43
VAMP4-203ENST00000474047 ZNF804AQ7Z570 1209 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 TXNRD3Q86VQ6 643 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 TMEM57Q8N5G2 664 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 KLHDC4Q8TBB5 520 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 KLRK1P26718 216 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 LRRC24Q50LG9 513 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 RIPOR2Q9Y4F9 1068 aa17.75■□□□□ 0.43
VAMP4-203ENST00000474047 RSBN1LQ6PCB5 846 aaPredicted RBP17.74■□□□□ 0.43
VAMP4-203ENST00000474047 UBE4AQ14139 1066 aa17.73■□□□□ 0.43
VAMP4-203ENST00000474047 RBM26Q5T8P6 1007 aaKnown RBP17.73■□□□□ 0.43
VAMP4-203ENST00000474047 MAP1SQ66K74 1059 aaPredicted RBP17.73■□□□□ 0.43
VAMP4-203ENST00000474047 ITPRIPQ8IWB1 547 aa17.73■□□□□ 0.43
VAMP4-203ENST00000474047 CNTROBQ8N137 903 aa17.73■□□□□ 0.43
VAMP4-203ENST00000474047 AGBL3Q8NEM8 1001 aa17.73■□□□□ 0.43
VAMP4-203ENST00000474047 GNAI2P04899 355 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 MS4A1P11836 297 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 TTLL5Q6EMB2 1281 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 RCAN3Q9UKA8 241 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 SHTN1A0MZ66 631 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 EYA2O00167 538 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 SCN9AQ15858 1988 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 C15orf52Q6ZUT6 534 aaKnown RBP17.72■□□□□ 0.43
VAMP4-203ENST00000474047 YTHDC1Q96MU7 727 aaKnown RBP17.72■□□□□ 0.43
VAMP4-203ENST00000474047 SIL1Q9H173 461 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 CD209Q9NNX6 404 aa17.72■□□□□ 0.43
VAMP4-203ENST00000474047 GTF2IP78347 998 aa17.71■□□□□ 0.43
VAMP4-203ENST00000474047 PTPN12Q05209 780 aaKnown RBP17.71■□□□□ 0.43
VAMP4-203ENST00000474047 TBC1D10BQ4KMP7 808 aaPredicted RBP17.71■□□□□ 0.43
VAMP4-203ENST00000474047 STRIP1Q5VSL9 837 aa17.71■□□□□ 0.43
VAMP4-203ENST00000474047 SAMD7Q7Z3H4 446 aa17.71■□□□□ 0.43
VAMP4-203ENST00000474047 VPS37DQ86XT2 251 aa17.71■□□□□ 0.43
VAMP4-203ENST00000474047 SRGAP3O43295 1099 aa17.7■□□□□ 0.42
VAMP4-203ENST00000474047 PDE8BO95263 885 aa17.7■□□□□ 0.42
VAMP4-203ENST00000474047 RFX5P48382 616 aaPredicted RBP17.7■□□□□ 0.42
VAMP4-203ENST00000474047 MYO3BQ8WXR4 1341 aa17.7■□□□□ 0.42
VAMP4-203ENST00000474047 USP17L8P0C7I0 530 aa17.69■□□□□ 0.42
VAMP4-203ENST00000474047 HIBADHP31937 336 aaKnown RBP17.69■□□□□ 0.42
VAMP4-203ENST00000474047 CAVIN4Q5BKX8 364 aa17.69■□□□□ 0.42
VAMP4-203ENST00000474047 OGFOD1Q8N543 542 aa17.69■□□□□ 0.42
VAMP4-203ENST00000474047 TRPM4Q8TD43 1214 aa17.69■□□□□ 0.42
VAMP4-203ENST00000474047 FBXO3Q9UK99 471 aa17.69■□□□□ 0.42
VAMP4-203ENST00000474047 A0A1B0GUL6 1792 aa17.69■□□□□ 0.42
VAMP4-203ENST00000474047 IFIT1P09914 478 aaKnown RBP17.69■□□□□ 0.42
VAMP4-203ENST00000474047 CEP126Q9P2H0 1117 aa17.69■□□□□ 0.42
VAMP4-203ENST00000474047 FRAT2O75474 233 aaPredicted RBP17.68■□□□□ 0.42
VAMP4-203ENST00000474047 ITGBL1O95965 494 aaPredicted RBP17.68■□□□□ 0.42
VAMP4-203ENST00000474047 GYG1P46976 350 aa17.68■□□□□ 0.42
VAMP4-203ENST00000474047 HTRA3P83110 453 aa17.68■□□□□ 0.42
VAMP4-203ENST00000474047 PUM3Q15397 648 aaKnown RBP17.68■□□□□ 0.42
VAMP4-203ENST00000474047 KIF4BQ2VIQ3 1234 aa17.68■□□□□ 0.42
VAMP4-203ENST00000474047 DACT2Q5SW24 774 aa17.68■□□□□ 0.42
VAMP4-203ENST00000474047 ZC3H15Q8WU90 426 aaKnown RBP17.68■□□□□ 0.42
VAMP4-203ENST00000474047 MXD3Q9BW11 206 aa17.68■□□□□ 0.42
VAMP4-203ENST00000474047 CIAO1O76071 339 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 RLBP1P12271 317 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 IL1R1P14778 569 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 HIRAP54198 1017 aaPredicted RBP17.67■□□□□ 0.42
VAMP4-203ENST00000474047 PANK1Q8TE04 598 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 HDAC9Q9UKV0 1011 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 PA2G4Q9UQ80 394 aaKnown RBP17.67■□□□□ 0.42
VAMP4-203ENST00000474047 IRS2Q9Y4H2 1338 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 PSME4Q14997 1843 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 SLC5A1P13866 664 aa17.67■□□□□ 0.42
VAMP4-203ENST00000474047 IL15P40933 162 aaPredicted RBP17.67■□□□□ 0.42
VAMP4-203ENST00000474047 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.67■□□□□ 0.42
VAMP4-203ENST00000474047 DCPSQ96C86 337 aaKnown RBP17.67■□□□□ 0.42
VAMP4-203ENST00000474047 ADAMTSL1Q8N6G6 1762 aa17.66■□□□□ 0.42
VAMP4-203ENST00000474047 PASKQ96RG2 1323 aa17.66■□□□□ 0.42
VAMP4-203ENST00000474047 ATG9AQ7Z3C6 839 aa17.66■□□□□ 0.42
VAMP4-203ENST00000474047 VGLL2Q8N8G2 317 aa17.66■□□□□ 0.42
VAMP4-203ENST00000474047 FAM84BQ96KN1 310 aaPredicted RBP17.66■□□□□ 0.42
VAMP4-203ENST00000474047 GMLQ99445 158 aa17.66■□□□□ 0.42
VAMP4-203ENST00000474047 MYOZ2Q9NPC6 264 aa17.66■□□□□ 0.42
VAMP4-203ENST00000474047 COPRSQ9NQ92 184 aa17.66■□□□□ 0.42
VAMP4-203ENST00000474047 TMEM88BA6NKF7 163 aa17.65■□□□□ 0.42
VAMP4-203ENST00000474047 SASH1O94885 1247 aa17.65■□□□□ 0.42
VAMP4-203ENST00000474047 ZNF280AP59817 542 aaPredicted RBP17.65■□□□□ 0.42
VAMP4-203ENST00000474047 MTX1Q13505 466 aa17.65■□□□□ 0.42
VAMP4-203ENST00000474047 CDC37L1Q7L3B6 337 aa17.65■□□□□ 0.42
VAMP4-203ENST00000474047 KIAA0825Q8IV33 1275 aa17.65■□□□□ 0.42
VAMP4-203ENST00000474047 JAG2Q9Y219 1238 aa17.65■□□□□ 0.42
VAMP4-203ENST00000474047 ZBTB7BO15156 539 aaPredicted RBP17.64■□□□□ 0.41
VAMP4-203ENST00000474047 EGFRP00533 1210 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 LPIN2Q92539 896 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 CREBZFQ9NS37 354 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 PGAP2Q9UHJ9 254 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 ZNF609O15014 1411 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 MMP14P50281 582 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 G3BP1Q13283 466 aaKnown RBP eCLIP17.64■□□□□ 0.41
VAMP4-203ENST00000474047 SCARF1Q14162 830 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 ATP2B3Q16720 1220 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 TDRD7Q8NHU6 1098 aaKnown RBP17.64■□□□□ 0.41
VAMP4-203ENST00000474047 GLIS2Q9BZE0 524 aaPredicted RBP17.64■□□□□ 0.41
VAMP4-203ENST00000474047 C1orf115Q9H7X2 142 aa17.64■□□□□ 0.41
VAMP4-203ENST00000474047 IQSEC3Q9UPP2 1182 aaPredicted RBP17.64■□□□□ 0.41
VAMP4-203ENST00000474047 F8W031 263 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms