RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NALCNQ8IZF0 1738 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 PTPDC1A2A3K4 754 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 STOX1Q6ZVD7 989 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 TTLL11Q8NHH1 800 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 TNMDQ9H2S6 317 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 MTMR6Q9Y217 621 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 MAST3O60307 1309 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 MBD4O95243 580 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 FGAP02671 866 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 DDIT3P35638 169 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 CTSWP56202 376 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 UTP14AQ9BVJ6 771 aaKnown RBP16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 SH2B1Q9NRF2 756 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 MAP3K15Q6ZN16 1313 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 E7EWF7 191 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 MARCKSP29966 332 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 ANKRD1Q15327 319 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 ZBTB38Q8NAP3 1195 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 AOX1Q06278 1338 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 RANBP6O60518 1105 aaKnown RBP16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 AIFM3Q96NN9 605 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 TEX13AQ9BXU3 409 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 ZNF532Q9HCE3 1301 aa16.17■□□□□ 0.18
CCDC88A-211ENST00000471947 ZPR1O75312 459 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 LIG1P18858 919 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 PDCP20941 246 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 NBPF5PQ86XG9 351 aaPredicted RBP16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 SDR42E1Q8WUS8 393 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 ORC3Q9UBD5 711 aaPredicted RBP16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 NWD1Q149M9 1564 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 KRT32Q14532 448 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 STK38Q15208 465 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 CCDC102BQ68D86 513 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 FAM43AQ8N2R8 423 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 CCDC87Q9NVE4 849 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 ANKIB1Q9P2G1 1089 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 SH3TC1Q8TE82 1336 aa16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 TTC12Q9H892 705 aaPredicted RBP16.16■□□□□ 0.18
CCDC88A-211ENST00000471947 IFIT3O14879 490 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 MCAMP43121 646 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 SYNE3Q6ZMZ3 975 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 CYP19A1P11511 503 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 CYP7A1P22680 504 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 CUL4AQ13619 759 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 INTS4Q96HW7 963 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 TTC14Q96N46 770 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 SOS2Q07890 1332 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 ADD1P35611 737 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 SCRN1Q12765 414 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 TOB2Q14106 344 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 LRRFIP1Q32MZ4 808 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 DHX32Q7L7V1 743 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 TTC6Q86TZ1 520 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 MARCH10Q8NA82 808 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 NUP62CLQ9H1M0 184 aa16.15■□□□□ 0.18
CCDC88A-211ENST00000471947 NFAT5O94916 1531 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 CYP2D7A0A087X1C5 515 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 BECN2A8MW95 431 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 SLC5A1P13866 664 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 PIH1D3Q9NQM4 214 aaKnown RBP16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 SLC4A4Q9Y6R1 1079 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 RBM10P98175 930 aaKnown RBP16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 SASS6Q6UVJ0 657 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 LRSAM1Q6UWE0 723 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 F8W031 263 aaPredicted RBP16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 SPECC1Q5M775 1068 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 USPL1Q5W0Q7 1092 aa16.14■□□□□ 0.17
CCDC88A-211ENST00000471947 CCDC73Q6ZRK6 1079 aa16.13■□□□□ 0.17
CCDC88A-211ENST00000471947 C8orf76Q96K31 380 aa16.13■□□□□ 0.17
CCDC88A-211ENST00000471947 TRIM5Q9C035 493 aa16.13■□□□□ 0.17
CCDC88A-211ENST00000471947 PDE8AO60658 829 aa16.13■□□□□ 0.17
CCDC88A-211ENST00000471947 PCCAP05165 728 aaPredicted RBP16.13■□□□□ 0.17
CCDC88A-211ENST00000471947 ITPK1Q13572 414 aa16.13■□□□□ 0.17
CCDC88A-211ENST00000471947 LTN1O94822 1766 aa16.13■□□□□ 0.17
CCDC88A-211ENST00000471947 FSD2A1L4K1 749 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 MAP3K12Q12852 859 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 CSPP1Q1MSJ5 1256 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 TMEM67Q5HYA8 995 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 TOM1O60784 492 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 SLC51AQ86UW1 340 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 LUZP1Q86V48 1076 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 PDILTQ8N807 584 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 ERBB4Q15303 1308 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 SLC26A6Q9BXS9 759 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 ZNF609O15014 1411 aa16.12■□□□□ 0.17
CCDC88A-211ENST00000471947 ERFEQ4G0M1 354 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 CAMTA1Q9Y6Y1 1673 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 UBE2Q2LH0YL09 131 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 SMIM22K7EJ46 135 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 CCDC173Q0VFZ6 552 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 LRP10Q7Z4F1 713 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 ZNF592Q92610 1267 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 FMN2Q9NZ56 1722 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 CCDC69A6NI79 296 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 G3V3G9 751 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 UBE2HP62256 183 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 CCDC152Q4G0S7 254 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 CCDC183Q5T5S1 534 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 DCAF8Q5TAQ9 597 aa16.11■□□□□ 0.17
CCDC88A-211ENST00000471947 CTNNA3Q9UI47 895 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms