RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 AGBL3Q8NEM8 1001 aa13.24□□□□□ -0.29
UBR4-208ENST00000459947 ZBTB40Q9NUA8 1239 aa13.24□□□□□ -0.29
UBR4-208ENST00000459947 COL4A1P02462 1669 aa13.24□□□□□ -0.29
UBR4-208ENST00000459947 RIMBP2O15034 1052 aa13.24□□□□□ -0.29
UBR4-208ENST00000459947 SEMA3EO15041 775 aa13.24□□□□□ -0.29
UBR4-208ENST00000459947 NOP58Q9Y2X3 529 aaKnown RBP13.24□□□□□ -0.29
UBR4-208ENST00000459947 OS9Q13438 667 aaPredicted RBP13.23□□□□□ -0.29
UBR4-208ENST00000459947 RBM46Q8TBY0 533 aaKnown RBP13.23□□□□□ -0.29
UBR4-208ENST00000459947 USP17L3A6NCW0 530 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 USP17L4A6NCW7 530 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 STRIP1Q5VSL9 837 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 USP17L1Q7RTZ2 530 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 ZNF541Q9H0D2 1346 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 CXCL9Q07325 125 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 ATP2B3Q16720 1220 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 CEP85Q6P2H3 762 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 VPS37DQ86XT2 251 aa13.23□□□□□ -0.29
UBR4-208ENST00000459947 RAB11FIP3O75154 756 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 HIBADHP31937 336 aaKnown RBP13.22□□□□□ -0.29
UBR4-208ENST00000459947 TBC1D22AQ8WUA7 517 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 IL1R1P14778 569 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 ARAP2Q8WZ64 1704 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 H7C1D1 291 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 USP50Q70EL3 339 aaPredicted RBP13.22□□□□□ -0.29
UBR4-208ENST00000459947 VGLL2Q8N8G2 317 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 HDAC9Q9UKV0 1011 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 GJA3Q9Y6H8 435 aa13.22□□□□□ -0.29
UBR4-208ENST00000459947 PLIN1O60240 522 aa13.21□□□□□ -0.29
UBR4-208ENST00000459947 VIL1P09327 827 aaKnown RBP13.21□□□□□ -0.29
UBR4-208ENST00000459947 FSTL1Q12841 308 aa13.21□□□□□ -0.29
UBR4-208ENST00000459947 LRRC24Q50LG9 513 aa13.21□□□□□ -0.29
UBR4-208ENST00000459947 ATG9AQ7Z3C6 839 aa13.21□□□□□ -0.29
UBR4-208ENST00000459947 PUS3Q9BZE2 481 aaKnown RBP13.21□□□□□ -0.29
UBR4-208ENST00000459947 DBNDD1Q9H9R9 158 aa13.21□□□□□ -0.29
UBR4-208ENST00000459947 CD209Q9NNX6 404 aa13.21□□□□□ -0.29
UBR4-208ENST00000459947 FGFR2P21802 821 aa13.21□□□□□ -0.3
UBR4-208ENST00000459947 ADARB2Q9NS39 739 aaKnown RBP13.21□□□□□ -0.3
UBR4-208ENST00000459947 SUGT1Q9Y2Z0 365 aa13.21□□□□□ -0.3
UBR4-208ENST00000459947 PDS5AQ29RF7 1337 aaKnown RBP13.21□□□□□ -0.3
UBR4-208ENST00000459947 FAM205AQ6ZU69 1335 aa13.21□□□□□ -0.3
UBR4-208ENST00000459947 RSBN1LQ6PCB5 846 aaPredicted RBP13.2□□□□□ -0.3
UBR4-208ENST00000459947 MAST3O60307 1309 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 TAF5LO75529 589 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 TOMM70O94826 608 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 DOK7Q18PE1 504 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 FBXO33Q7Z6M2 555 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 IRS2Q9Y4H2 1338 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 SURF6O75683 361 aaKnown RBP13.2□□□□□ -0.3
UBR4-208ENST00000459947 DDNO94850 711 aaPredicted RBP13.2□□□□□ -0.3
UBR4-208ENST00000459947 SMC1BQ8NDV3 1235 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 HELBQ8NG08 1087 aaPredicted RBP13.2□□□□□ -0.3
UBR4-208ENST00000459947 COL4A5P29400 1685 aa13.2□□□□□ -0.3
UBR4-208ENST00000459947 LDHDQ86WU2 507 aa13.19□□□□□ -0.3
UBR4-208ENST00000459947 ZGPATQ8N5A5 531 aaKnown RBP13.19□□□□□ -0.3
UBR4-208ENST00000459947 RRAGCQ9HB90 399 aa13.19□□□□□ -0.3
UBR4-208ENST00000459947 GPRC5DQ9NZD1 345 aa13.19□□□□□ -0.3
UBR4-208ENST00000459947 TDRD7Q8NHU6 1098 aaKnown RBP13.19□□□□□ -0.3
UBR4-208ENST00000459947 SIL1Q9H173 461 aa13.19□□□□□ -0.3
UBR4-208ENST00000459947 UQCRFS1P1P0C7P4 283 aa13.19□□□□□ -0.3
UBR4-208ENST00000459947 EPHX2P34913 555 aa13.19□□□□□ -0.3
UBR4-208ENST00000459947 ZC3H15Q8WU90 426 aaKnown RBP13.19□□□□□ -0.3
UBR4-208ENST00000459947 YDJCA8MPS7 323 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 PSMD14O00487 310 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 RAD17O75943 681 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 GMPSP49915 693 aaPredicted RBP13.18□□□□□ -0.3
UBR4-208ENST00000459947 TAF1DQ9H5J8 278 aaPredicted RBP13.18□□□□□ -0.3
UBR4-208ENST00000459947 DENND2AQ9ULE3 1009 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 PNMA6EA0A0J9YXQ4 647 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 WDR66Q8TBY9 1149 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 KIF1BPQ96EK5 621 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 KIF3CO14782 793 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 TMED8Q6PL24 325 aaPredicted RBP13.18□□□□□ -0.3
UBR4-208ENST00000459947 OGFOD1Q8N543 542 aa13.18□□□□□ -0.3
UBR4-208ENST00000459947 ZNF526Q8TF50 670 aaPredicted RBP13.18□□□□□ -0.3
UBR4-208ENST00000459947 FRAT2O75474 233 aaPredicted RBP13.17□□□□□ -0.3
UBR4-208ENST00000459947 SASH1O94885 1247 aa13.17□□□□□ -0.3
UBR4-208ENST00000459947 GORABQ5T7V8 394 aa13.17□□□□□ -0.3
UBR4-208ENST00000459947 NMRK2Q9NPI5 230 aa13.17□□□□□ -0.3
UBR4-208ENST00000459947 PA2G4Q9UQ80 394 aaKnown RBP13.17□□□□□ -0.3
UBR4-208ENST00000459947 TTLL5Q6EMB2 1281 aa13.17□□□□□ -0.3
UBR4-208ENST00000459947 KLHDC4Q8TBB5 520 aa13.17□□□□□ -0.3
UBR4-208ENST00000459947 FAM84BQ96KN1 310 aaPredicted RBP13.17□□□□□ -0.3
UBR4-208ENST00000459947 C1orf115Q9H7X2 142 aa13.17□□□□□ -0.3
UBR4-208ENST00000459947 ZBTB47Q9UFB7 747 aaPredicted RBP13.17□□□□□ -0.3
UBR4-208ENST00000459947 ZNF280AP59817 542 aaPredicted RBP13.16□□□□□ -0.3
UBR4-208ENST00000459947 DACT2Q5SW24 774 aa13.16□□□□□ -0.3
UBR4-208ENST00000459947 CENPBP07199 599 aaPredicted RBP13.16□□□□□ -0.3
UBR4-208ENST00000459947 SPTY2D1Q68D10 685 aaPredicted RBP13.16□□□□□ -0.3
UBR4-208ENST00000459947 CHADLQ6NUI6 762 aa13.16□□□□□ -0.3
UBR4-208ENST00000459947 GPR101Q96P66 508 aaPredicted RBP13.16□□□□□ -0.3
UBR4-208ENST00000459947 USP17L8P0C7I0 530 aa13.16□□□□□ -0.3
UBR4-208ENST00000459947 HDLBPQ00341 1268 aaKnown RBP13.16□□□□□ -0.3
UBR4-208ENST00000459947 TFCP2Q12800 502 aa13.15□□□□□ -0.3
UBR4-208ENST00000459947 CCDC158Q5M9N0 1113 aa13.15□□□□□ -0.3
UBR4-208ENST00000459947 FBXW7Q969H0 707 aa13.15□□□□□ -0.3
UBR4-208ENST00000459947 CNOT7Q9UIV1 285 aaKnown RBP13.15□□□□□ -0.3
UBR4-208ENST00000459947 SCNN1DP51172 638 aa13.15□□□□□ -0.3
UBR4-208ENST00000459947 C20orf194Q5TEA3 1177 aa13.15□□□□□ -0.3
UBR4-208ENST00000459947 SLF2Q8IX21 1173 aa13.15□□□□□ -0.3
UBR4-208ENST00000459947 CLASRPQ8N2M8 674 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms