RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 GLIS2Q9BZE0 524 aaPredicted RBP15.22■□□□□ 0.03
USP40-210ENST00000454354 CHMP3Q9Y3E7 222 aa15.22■□□□□ 0.03
USP40-210ENST00000454354 KLRK1P26718 216 aa15.21■□□□□ 0.03
USP40-210ENST00000454354 VEGFBP49765 207 aa15.21■□□□□ 0.03
USP40-210ENST00000454354 BRPF1P55201 1214 aaPredicted RBP15.21■□□□□ 0.03
USP40-210ENST00000454354 CCDC57Q2TAC2 916 aa15.21■□□□□ 0.03
USP40-210ENST00000454354 KIF4BQ2VIQ3 1234 aa15.21■□□□□ 0.03
USP40-210ENST00000454354 DEFB115Q30KQ5 88 aa15.21■□□□□ 0.03
USP40-210ENST00000454354 C15orf52Q6ZUT6 534 aaKnown RBP15.21■□□□□ 0.03
USP40-210ENST00000454354 CDC37L1Q7L3B6 337 aa15.21■□□□□ 0.03
USP40-210ENST00000454354 HSPA1AP0DMV8 641 aaKnown RBP15.2■□□□□ 0.02
USP40-210ENST00000454354 HSPA1BP0DMV9 641 aaKnown RBP15.2■□□□□ 0.02
USP40-210ENST00000454354 RABL6Q3YEC7 729 aaPredicted RBP15.2■□□□□ 0.02
USP40-210ENST00000454354 DACT2Q5SW24 774 aa15.2■□□□□ 0.02
USP40-210ENST00000454354 STRIP1Q5VSL9 837 aa15.2■□□□□ 0.02
USP40-210ENST00000454354 SMC4Q9NTJ3 1288 aa15.2■□□□□ 0.02
USP40-210ENST00000454354 ABT1Q9ULW3 272 aaKnown RBP15.2■□□□□ 0.02
USP40-210ENST00000454354 TLL2Q9Y6L7 1015 aa15.2■□□□□ 0.02
USP40-210ENST00000454354 MYO3BQ8WXR4 1341 aa15.19■□□□□ 0.02
USP40-210ENST00000454354 MYH13Q9UKX3 1938 aa15.19■□□□□ 0.02
USP40-210ENST00000454354 KCNJ4P48050 445 aa15.19■□□□□ 0.02
USP40-210ENST00000454354 LDHAL6AQ6ZMR3 332 aa15.19■□□□□ 0.02
USP40-210ENST00000454354 ZNF594Q96JF6 807 aaPredicted RBP15.19■□□□□ 0.02
USP40-210ENST00000454354 TAF5LO75529 589 aa15.18■□□□□ 0.02
USP40-210ENST00000454354 CELF2O95319 508 aaKnown RBP15.18■□□□□ 0.02
USP40-210ENST00000454354 USP17L8P0C7I0 530 aa15.18■□□□□ 0.02
USP40-210ENST00000454354 MMP14P50281 582 aa15.18■□□□□ 0.02
USP40-210ENST00000454354 TAF7LQ5H9L4 462 aa15.18■□□□□ 0.02
USP40-210ENST00000454354 DIEXFQ68CQ4 756 aaKnown RBP15.18■□□□□ 0.02
USP40-210ENST00000454354 ANKRD44Q8N8A2 993 aa15.18■□□□□ 0.02
USP40-210ENST00000454354 USP44Q9H0E7 712 aa15.18■□□□□ 0.02
USP40-210ENST00000454354 BICC1Q9H694 974 aaKnown RBP15.18■□□□□ 0.02
USP40-210ENST00000454354 WDR33Q9C0J8 1336 aaKnown RBP15.17■□□□□ 0.02
USP40-210ENST00000454354 SNAP23O00161 211 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 RBM26Q5T8P6 1007 aaKnown RBP15.17■□□□□ 0.02
USP40-210ENST00000454354 KRT26Q7Z3Y9 468 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 SAPCD2Q86UD0 394 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 USP48Q86UV5 1035 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 HELBQ8NG08 1087 aaPredicted RBP15.17■□□□□ 0.02
USP40-210ENST00000454354 HHIPL1Q96JK4 782 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 CD209Q9NNX6 404 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 MYOZ2Q9NPC6 264 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 CNNM1Q9NRU3 951 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 GGA3Q9NZ52 723 aa15.17■□□□□ 0.02
USP40-210ENST00000454354 MIER1Q8N108 512 aa15.16■□□□□ 0.02
USP40-210ENST00000454354 DCPSQ96C86 337 aaKnown RBP15.16■□□□□ 0.02
USP40-210ENST00000454354 PAPPA2Q9BXP8 1791 aa15.16■□□□□ 0.02
USP40-210ENST00000454354 ASTN2O75129 1339 aaPredicted RBP15.16■□□□□ 0.02
USP40-210ENST00000454354 PITPNM2Q9BZ72 1349 aa15.16■□□□□ 0.02
USP40-210ENST00000454354 IL1R1P14778 569 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 ECE1P42892 770 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 RARSP54136 660 aaKnown RBP15.15■□□□□ 0.02
USP40-210ENST00000454354 SCARF1Q14162 830 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 TTLL5Q6EMB2 1281 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 ZNF804AQ7Z570 1209 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 CAPNS2Q96L46 248 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 MXD3Q9BW11 206 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 MROH5Q6ZUA9 1318 aa15.15■□□□□ 0.02
USP40-210ENST00000454354 ADM5C9JUS6 153 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 UBE4AQ14139 1066 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 CYP4F22Q6NT55 531 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 FBXW7Q969H0 707 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 PUS3Q9BZE2 481 aaKnown RBP15.14■□□□□ 0.01
USP40-210ENST00000454354 API5Q9BZZ5 524 aaKnown RBP15.14■□□□□ 0.01
USP40-210ENST00000454354 ZNF408Q9H9D4 720 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 WBP1LQ9NX94 342 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 NOB1Q9ULX3 412 aaKnown RBP15.14■□□□□ 0.01
USP40-210ENST00000454354 RIPOR2Q9Y4F9 1068 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 KIF16BQ96L93 1317 aa15.14■□□□□ 0.01
USP40-210ENST00000454354 FKBP1AP62942 108 aaKnown RBP15.13■□□□□ 0.01
USP40-210ENST00000454354 GTF2IP78347 998 aa15.13■□□□□ 0.01
USP40-210ENST00000454354 IFFO2Q5TF58 517 aa15.13■□□□□ 0.01
USP40-210ENST00000454354 ANGEL2Q5VTE6 544 aaKnown RBP15.13■□□□□ 0.01
USP40-210ENST00000454354 DLK2Q6UY11 383 aa15.13■□□□□ 0.01
USP40-210ENST00000454354 SULF1Q8IWU6 871 aa15.13■□□□□ 0.01
USP40-210ENST00000454354 OGFOD1Q8N543 542 aa15.13■□□□□ 0.01
USP40-210ENST00000454354 FOXN1O15353 648 aa15.12■□□□□ 0.01
USP40-210ENST00000454354 PLIN1O60240 522 aa15.12■□□□□ 0.01
USP40-210ENST00000454354 COL13A1Q5TAT6 717 aaPredicted RBP15.12■□□□□ 0.01
USP40-210ENST00000454354 CERS5Q8N5B7 392 aa15.12■□□□□ 0.01
USP40-210ENST00000454354 ARHGAP45Q92619 1136 aa15.12■□□□□ 0.01
USP40-210ENST00000454354 ZBED3Q96IU2 234 aaPredicted RBP15.12■□□□□ 0.01
USP40-210ENST00000454354 GBA2Q9HCG7 927 aaPredicted RBP15.12■□□□□ 0.01
USP40-210ENST00000454354 AKAP11Q9UKA4 1901 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 WNT10BO00744 389 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 MAP2K2P36507 400 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 RFX5P48382 616 aaPredicted RBP15.11■□□□□ 0.01
USP40-210ENST00000454354 MAP2K1Q02750 393 aaPredicted RBP15.11■□□□□ 0.01
USP40-210ENST00000454354 NBPF9Q3BBW0 867 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 PAXIP1Q6ZW49 1069 aaPredicted RBP15.11■□□□□ 0.01
USP40-210ENST00000454354 VGLL2Q8N8G2 317 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 CDCA5Q96FF9 252 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 HDAC9Q9UKV0 1011 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 FAM205AQ6ZU69 1335 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 LAMB1P07942 1786 aa15.11■□□□□ 0.01
USP40-210ENST00000454354 COL1A1P02452 1464 aaPredicted RBP15.1■□□□□ 0.01
USP40-210ENST00000454354 UBTFL1P0CB47 393 aaPredicted RBP15.1■□□□□ 0.01
USP40-210ENST00000454354 HUNKP57058 714 aa15.1■□□□□ 0.01
USP40-210ENST00000454354 LRRC24Q50LG9 513 aa15.1■□□□□ 0.01
USP40-210ENST00000454354 KIAA0825Q8IV33 1275 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms