RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ZBTB9Q96C00 473 aa15.07■□□□□ 0
USP40-208ENST00000450966 SMC6Q96SB8 1091 aa15.07■□□□□ 0
USP40-208ENST00000450966 RHOXF2Q9BQY4 288 aa15.07■□□□□ 0
USP40-208ENST00000450966 TANGO6Q9C0B7 1094 aa15.07■□□□□ 0
USP40-208ENST00000450966 SIL1Q9H173 461 aa15.07■□□□□ 0
USP40-208ENST00000450966 USH1CQ9Y6N9 552 aa15.07■□□□□ 0
USP40-208ENST00000450966 ZSCAN22P10073 491 aaPredicted RBP15.07■□□□□ 0
USP40-208ENST00000450966 RFC4P35249 363 aa15.07■□□□□ 0
USP40-208ENST00000450966 TYRO3Q06418 890 aa15.07■□□□□ 0
USP40-208ENST00000450966 GBP7Q8N8V2 638 aaPredicted RBP15.07■□□□□ 0
USP40-208ENST00000450966 ANKRD24Q8TF21 1146 aa15.07■□□□□ 0
USP40-208ENST00000450966 CREB3O43889 395 aa15.07■□□□□ 0
USP40-208ENST00000450966 CDKL5O76039 1030 aa15.07■□□□□ 0
USP40-208ENST00000450966 DESP17661 470 aa15.07■□□□□ 0
USP40-208ENST00000450966 NLRP5P59047 1200 aa15.07■□□□□ 0
USP40-208ENST00000450966 FKBP15Q5T1M5 1219 aa15.07■□□□□ 0
USP40-208ENST00000450966 LARSQ9P2J5 1176 aaKnown RBP15.07■□□□□ 0
USP40-208ENST00000450966 MRFAP1Q9Y605 127 aa15.07■□□□□ 0
USP40-208ENST00000450966 BICDL1Q6ZP65 573 aa15.07■□□□□ 0
USP40-208ENST00000450966 TPX2Q9ULW0 747 aaKnown RBP15.07■□□□□ 0
USP40-208ENST00000450966 EXOC4Q96A65 974 aa15.06■□□□□ 0
USP40-208ENST00000450966 RAB11FIP3O75154 756 aa15.06■□□□□ 0
USP40-208ENST00000450966 MPRIPQ6WCQ1 1025 aa15.06■□□□□ 0
USP40-208ENST00000450966 ZSCAN29Q8IWY8 852 aaPredicted RBP15.06■□□□□ 0
USP40-208ENST00000450966 JPH2Q9BR39 696 aaPredicted RBP15.06■□□□□ 0
USP40-208ENST00000450966 RNF216Q9NWF9 866 aaPredicted RBP15.06■□□□□ 0
USP40-208ENST00000450966 DBF4Q9UBU7 674 aaPredicted RBP15.06■□□□□ 0
USP40-208ENST00000450966 FSIP1Q8NA03 581 aa15.06■□□□□ 0
USP40-208ENST00000450966 CXorf56Q9H5V9 222 aa15.06■□□□□ 0
USP40-208ENST00000450966 DNAJC8O75937 253 aaPredicted RBP15.06■□□□□ 0
USP40-208ENST00000450966 MED4Q9NPJ6 270 aa15.06■□□□□ 0
USP40-208ENST00000450966 GSTTP1A0A1W2PQM5 241 aa15.06■□□□□ 0
USP40-208ENST00000450966 CHMP4BP1P59074 171 aa15.06■□□□□ 0
USP40-208ENST00000450966 RAB11FIP4Q86YS3 637 aa15.06■□□□□ 0
USP40-208ENST00000450966 CPLX3Q8WVH0 158 aa15.06■□□□□ 0
USP40-208ENST00000450966 C1orf115Q9H7X2 142 aa15.06■□□□□ 0
USP40-208ENST00000450966 LDHCP07864 332 aa15.05■□□□□ 0
USP40-208ENST00000450966 ALDH1L2Q3SY69 923 aa15.05■□□□□ 0
USP40-208ENST00000450966 MIER3Q7Z3K6 550 aa15.05■□□□□ 0
USP40-208ENST00000450966 NME9Q86XW9 330 aa15.05■□□□□ 0
USP40-208ENST00000450966 PUF60Q9UHX1 559 aaKnown RBP15.05■□□□□ 0
USP40-208ENST00000450966 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.05■□□□□ 0
USP40-208ENST00000450966 PPFIA4O75335 1185 aa15.05■□□□□ -0
USP40-208ENST00000450966 SLC5A1P13866 664 aa15.05■□□□□ -0
USP40-208ENST00000450966 KCNA6P17658 529 aa15.05■□□□□ -0
USP40-208ENST00000450966 TMPOP42166 694 aaKnown RBP15.05■□□□□ -0
USP40-208ENST00000450966 ZCRB1Q8TBF4 217 aaKnown RBP15.05■□□□□ -0
USP40-208ENST00000450966 BMP2KQ9NSY1 1161 aaPredicted RBP15.05■□□□□ -0
USP40-208ENST00000450966 DDB1Q16531 1140 aa15.05■□□□□ -0
USP40-208ENST00000450966 PHLDB2Q86SQ0 1253 aa15.05■□□□□ -0
USP40-208ENST00000450966 TSPYL2Q9H2G4 693 aaPredicted RBP15.05■□□□□ -0
USP40-208ENST00000450966 FAM71BQ8TC56 605 aa15.05■□□□□ -0
USP40-208ENST00000450966 NBPF3Q9H094 633 aa15.05■□□□□ -0
USP40-208ENST00000450966 CEP131Q9UPN4 1083 aa15.05■□□□□ -0
USP40-208ENST00000450966 MATR3P43243 847 aaKnown RBP eCLIP15.04■□□□□ -01e-6■■■■□ 22
USP40-208ENST00000450966 PDCD2Q16342 344 aaPredicted RBP15.04■□□□□ -0
USP40-208ENST00000450966 UBAC1Q9BSL1 405 aa15.04■□□□□ -0
USP40-208ENST00000450966 CARD6Q9BX69 1037 aa15.04■□□□□ -0
USP40-208ENST00000450966 PBRM1Q86U86 1689 aa15.04■□□□□ -0
USP40-208ENST00000450966 PPFIA2O75334 1257 aa15.04■□□□□ -0
USP40-208ENST00000450966 MYCNP04198 464 aaPredicted RBP15.04■□□□□ -0
USP40-208ENST00000450966 TSR2Q969E8 191 aaKnown RBP15.04■□□□□ -0
USP40-208ENST00000450966 ZHX3Q9H4I2 956 aa15.04■□□□□ -0
USP40-208ENST00000450966 EIF2AK4Q9P2K8 1649 aaKnown RBP15.04■□□□□ -0
USP40-208ENST00000450966 CASQ2O14958 399 aaPredicted RBP15.04■□□□□ -0
USP40-208ENST00000450966 FKBP4Q02790 459 aaKnown RBP eCLIP15.04■□□□□ -0
USP40-208ENST00000450966 SLMAPQ14BN4 828 aa15.04■□□□□ -0
USP40-208ENST00000450966 LRP2BPQ9P2M1 347 aa15.04■□□□□ -0
USP40-208ENST00000450966 RAD51AP2Q09MP3 1159 aa15.04■□□□□ -0
USP40-208ENST00000450966 METTL24Q5JXM2 366 aa15.04■□□□□ -0
USP40-208ENST00000450966 INTS8Q75QN2 995 aaKnown RBP15.04■□□□□ -0
USP40-208ENST00000450966 CCDC65Q8IXS2 484 aa15.04■□□□□ -0
USP40-208ENST00000450966 SLC24A3Q9HC58 644 aa15.04■□□□□ -0
USP40-208ENST00000450966 NKTRP30414 1462 aaKnown RBP15.04■□□□□ -0
USP40-208ENST00000450966 CEP170Q5SW79 1584 aa15.04■□□□□ -0
USP40-208ENST00000450966 FRMD3A2A2Y4 597 aa15.03■□□□□ -0
USP40-208ENST00000450966 IFIT5Q13325 482 aaKnown RBP15.03■□□□□ -0
USP40-208ENST00000450966 AACSQ86V21 672 aa15.03■□□□□ -0
USP40-208ENST00000450966 PTCD1O75127 700 aaKnown RBP15.03■□□□□ -0
USP40-208ENST00000450966 HIP1RO75146 1068 aa15.03■□□□□ -0
USP40-208ENST00000450966 RPRD2Q5VT52 1461 aaKnown RBP15.03■□□□□ -0
USP40-208ENST00000450966 SPTY2D1Q68D10 685 aaPredicted RBP15.03■□□□□ -0
USP40-208ENST00000450966 TBC1D9Q6ZT07 1266 aa15.03■□□□□ -0
USP40-208ENST00000450966 SMARCC2Q8TAQ2 1214 aa15.03■□□□□ -0
USP40-208ENST00000450966 ALDH3A1P30838 453 aa15.03■□□□□ -0
USP40-208ENST00000450966 CYLC1P35663 651 aaPredicted RBP15.03■□□□□ -0
USP40-208ENST00000450966 DYNC1I2Q13409 638 aaKnown RBP15.03■□□□□ -0
USP40-208ENST00000450966 DUSP27Q5VZP5 1158 aa15.03■□□□□ -0
USP40-208ENST00000450966 VPS36Q86VN1 386 aa15.03■□□□□ -0
USP40-208ENST00000450966 CTAGE1Q96RT6 745 aa15.03■□□□□ -0
USP40-208ENST00000450966 SEC62Q99442 399 aaKnown RBP15.03■□□□□ -0
USP40-208ENST00000450966 DNAI2Q9GZS0 605 aa15.03■□□□□ -0
USP40-208ENST00000450966 ANKIB1Q9P2G1 1089 aa15.03■□□□□ -0
USP40-208ENST00000450966 PDE1CQ14123 709 aaPredicted RBP15.02■□□□□ -0
USP40-208ENST00000450966 TRMT112Q9UI30 125 aaKnown RBP15.02■□□□□ -0
USP40-208ENST00000450966 GOLGA6BA6NDN3 693 aa15.02■□□□□ -0
USP40-208ENST00000450966 SNRPA1P09661 255 aaKnown RBP15.02■□□□□ -0
USP40-208ENST00000450966 C17orf53Q8N3J3 647 aaPredicted RBP15.02■□□□□ -0
USP40-208ENST00000450966 C8orf37Q96NL8 207 aa15.02■□□□□ -0
USP40-208ENST00000450966 SELENOSQ9BQE4 189 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms