RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 DLK2Q6UY11 383 aa21.46■■□□□ 1.03
PRPF40A-204ENST00000450303 PODNQ7Z5L7 613 aa21.46■■□□□ 1.03
PRPF40A-204ENST00000450303 ZC3H15Q8WU90 426 aaKnown RBP21.46■■□□□ 1.03
PRPF40A-204ENST00000450303 FBXW7Q969H0 707 aa21.46■■□□□ 1.03
PRPF40A-204ENST00000450303 USP17L3A6NCW0 530 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 USP17L4A6NCW7 530 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 KCNJ4P48050 445 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 RARSP54136 660 aaKnown RBP21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 CCDC57Q2TAC2 916 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 TAF7LQ5H9L4 462 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 USP17L1Q7RTZ2 530 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 USP48Q86UV5 1035 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 MXD3Q9BW11 206 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 ZNF408Q9H9D4 720 aa21.45■■□□□ 1.02
PRPF40A-204ENST00000450303 CDC37L1Q7L3B6 337 aa21.44■■□□□ 1.02
PRPF40A-204ENST00000450303 KAZALD1Q96I82 304 aa21.44■■□□□ 1.02
PRPF40A-204ENST00000450303 SMC4Q9NTJ3 1288 aa21.44■■□□□ 1.02
PRPF40A-204ENST00000450303 PTPRCP08575 1304 aa21.44■■□□□ 1.02
PRPF40A-204ENST00000450303 RASSF10A6NK89 507 aa21.43■■□□□ 1.02
PRPF40A-204ENST00000450303 PLIN1O60240 522 aa21.43■■□□□ 1.02
PRPF40A-204ENST00000450303 CELF2O95319 508 aaKnown RBP21.43■■□□□ 1.02
PRPF40A-204ENST00000450303 KIF4BQ2VIQ3 1234 aa21.43■■□□□ 1.02
PRPF40A-204ENST00000450303 AGBL3Q8NEM8 1001 aa21.43■■□□□ 1.02
PRPF40A-204ENST00000450303 COA1Q9GZY4 146 aa21.43■■□□□ 1.02
PRPF40A-204ENST00000450303 A0A1B0GUL6 1792 aa21.43■■□□□ 1.02
PRPF40A-204ENST00000450303 ASTN2O75129 1339 aaPredicted RBP21.42■■□□□ 1.02
PRPF40A-204ENST00000450303 LDHAL6AQ6ZMR3 332 aa21.42■■□□□ 1.02
PRPF40A-204ENST00000450303 PAXIP1Q6ZW49 1069 aaPredicted RBP21.42■■□□□ 1.02
PRPF40A-204ENST00000450303 GMLQ99445 158 aa21.42■■□□□ 1.02
PRPF40A-204ENST00000450303 GRM1Q13255 1194 aa21.41■■□□□ 1.02
PRPF40A-204ENST00000450303 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.41■■□□□ 1.02
PRPF40A-204ENST00000450303 CNNM1Q9NRU3 951 aa21.41■■□□□ 1.02
PRPF40A-204ENST00000450303 UTYO14607 1347 aa21.4■■□□□ 1.02
PRPF40A-204ENST00000450303 USP17L8P0C7I0 530 aa21.4■■□□□ 1.02
PRPF40A-204ENST00000450303 ZNF280AP59817 542 aaPredicted RBP21.4■■□□□ 1.02
PRPF40A-204ENST00000450303 DACT2Q5SW24 774 aa21.4■■□□□ 1.02
PRPF40A-204ENST00000450303 DCPSQ96C86 337 aaKnown RBP21.4■■□□□ 1.02
PRPF40A-204ENST00000450303 BICC1Q9H694 974 aaKnown RBP21.4■■□□□ 1.02
PRPF40A-204ENST00000450303 ZNF646O15015 1829 aaPredicted RBP21.39■■□□□ 1.02
PRPF40A-204ENST00000450303 KIF16BQ96L93 1317 aa21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 WDR33Q9C0J8 1336 aaKnown RBP21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 ADM5C9JUS6 153 aa21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 BRPF1P55201 1214 aaPredicted RBP21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 CYP4F22Q6NT55 531 aa21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 KRT26Q7Z3Y9 468 aa21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 PUS3Q9BZE2 481 aaKnown RBP21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 TLL2Q9Y6L7 1015 aa21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 PCNTO95613 3336 aa21.39■■□□□ 1.01
PRPF40A-204ENST00000450303 IPO8O15397 1037 aaKnown RBP21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 GTF2IP78347 998 aa21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 SCARF1Q14162 830 aa21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 COL13A1Q5TAT6 717 aaPredicted RBP21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 TTLL5Q6EMB2 1281 aa21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 USP44Q9H0E7 712 aa21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 MYOZ2Q9NPC6 264 aa21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 GGA3Q9NZ52 723 aa21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 NOB1Q9ULX3 412 aaKnown RBP21.38■■□□□ 1.01
PRPF40A-204ENST00000450303 IRS2Q9Y4H2 1338 aa21.37■■□□□ 1.01
PRPF40A-204ENST00000450303 BCAR3O75815 825 aa21.37■■□□□ 1.01
PRPF40A-204ENST00000450303 STRIP1Q5VSL9 837 aa21.37■■□□□ 1.01
PRPF40A-204ENST00000450303 ANKRD44Q8N8A2 993 aa21.37■■□□□ 1.01
PRPF40A-204ENST00000450303 CAPNS2Q96L46 248 aa21.37■■□□□ 1.01
PRPF40A-204ENST00000450303 CD209Q9NNX6 404 aa21.37■■□□□ 1.01
PRPF40A-204ENST00000450303 ZNF609O15014 1411 aa21.37■■□□□ 1.01
PRPF40A-204ENST00000450303 ANGEL2Q5VTE6 544 aaKnown RBP21.36■■□□□ 1.01
PRPF40A-204ENST00000450303 SAPCD2Q86UD0 394 aa21.36■■□□□ 1.01
PRPF40A-204ENST00000450303 NEFLP07196 543 aa21.35■■□□□ 1.01
PRPF40A-204ENST00000450303 RABL6Q3YEC7 729 aaPredicted RBP21.35■■□□□ 1.01
PRPF40A-204ENST00000450303 SCAF8Q9UPN6 1271 aaKnown RBP21.35■■□□□ 1.01
PRPF40A-204ENST00000450303 FOXN1O15353 648 aa21.34■■□□□ 1.01
PRPF40A-204ENST00000450303 C15orf52Q6ZUT6 534 aaKnown RBP21.34■■□□□ 1.01
PRPF40A-204ENST00000450303 SULF1Q8IWU6 871 aa21.34■■□□□ 1.01
PRPF40A-204ENST00000450303 FRAT1Q92837 279 aaPredicted RBP21.34■■□□□ 1.01
PRPF40A-204ENST00000450303 MS4A1P11836 297 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 ECE1P42892 770 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 NBPF9Q3BBW0 867 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 IFFO2Q5TF58 517 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 ZNF804AQ7Z570 1209 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 KIAA0825Q8IV33 1275 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 OGFOD1Q8N543 542 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 KLHDC4Q8TBB5 520 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 ARHGAP45Q92619 1136 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 JAG2Q9Y219 1238 aa21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 SUPT16HQ9Y5B9 1047 aaKnown RBP21.33■■□□□ 1.01
PRPF40A-204ENST00000450303 MYO3BQ8WXR4 1341 aa21.32■■□□□ 1
PRPF40A-204ENST00000450303 AOC2O75106 756 aa21.32■■□□□ 1
PRPF40A-204ENST00000450303 LRRC24Q50LG9 513 aa21.32■■□□□ 1
PRPF40A-204ENST00000450303 ZKSCAN2Q63HK3 967 aa21.32■■□□□ 1
PRPF40A-204ENST00000450303 API5Q9BZZ5 524 aaKnown RBP21.32■■□□□ 1
PRPF40A-204ENST00000450303 WBP1LQ9NX94 342 aa21.32■■□□□ 1
PRPF40A-204ENST00000450303 RIPOR2Q9Y4F9 1068 aa21.32■■□□□ 1
PRPF40A-204ENST00000450303 AIDAQ96BJ3 306 aa21.31■■□□□ 1
PRPF40A-204ENST00000450303 CDCA5Q96FF9 252 aa21.31■■□□□ 1
PRPF40A-204ENST00000450303 SASH1O94885 1247 aa21.3■■□□□ 1
PRPF40A-204ENST00000450303 IL1R1P14778 569 aa21.3■■□□□ 1
PRPF40A-204ENST00000450303 GYG1P46976 350 aa21.3■■□□□ 1
PRPF40A-204ENST00000450303 HUNKP57058 714 aa21.3■■□□□ 1
PRPF40A-204ENST00000450303 CERS5Q8N5B7 392 aa21.3■■□□□ 1
PRPF40A-204ENST00000450303 GBA2Q9HCG7 927 aaPredicted RBP21.3■■□□□ 1
PRPF40A-204ENST00000450303 F8W031 263 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms