RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 SCARF1Q14162 830 aa18.88■□□□□ 0.61
SHQ1-202ENST00000444040 TTC39AQ5SRH9 613 aa18.88■□□□□ 0.61
SHQ1-202ENST00000444040 CCDC85AQ96PX6 553 aaPredicted RBP18.88■□□□□ 0.61
SHQ1-202ENST00000444040 DDX19AQ9NUU7 478 aaKnown RBP18.88■□□□□ 0.61
SHQ1-202ENST00000444040 MRVI1Q9Y6F6 885 aa18.88■□□□□ 0.61
SHQ1-202ENST00000444040 SALL1Q9NSC2 1324 aa18.88■□□□□ 0.61
SHQ1-202ENST00000444040 HMGN5P82970 282 aaKnown RBP18.87■□□□□ 0.61
SHQ1-202ENST00000444040 NAA16Q6N069 864 aaPredicted RBP18.87■□□□□ 0.61
SHQ1-202ENST00000444040 GIGYF2Q6Y7W6 1299 aaKnown RBP18.87■□□□□ 0.61
SHQ1-202ENST00000444040 STRCQ7RTU9 1775 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 FBXL16Q8N461 479 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 MAP3K15Q6ZN16 1313 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 PTPDC1A2A3K4 754 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 ZNF274Q96GC6 653 aaPredicted RBP18.87■□□□□ 0.61
SHQ1-202ENST00000444040 PDIA3P30101 505 aaKnown RBP18.87■□□□□ 0.61
SHQ1-202ENST00000444040 TYRO3Q06418 890 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 IFIT5Q13325 482 aaKnown RBP18.87■□□□□ 0.61
SHQ1-202ENST00000444040 MPNDQ8N594 471 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 FAM200AQ8TCP9 573 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 TNMDQ9H2S6 317 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 CLSTN2Q9H4D0 955 aa18.87■□□□□ 0.61
SHQ1-202ENST00000444040 STARD3NLO95772 234 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 ZFYP08048 801 aaPredicted RBP18.86■□□□□ 0.61
SHQ1-202ENST00000444040 CCT2P78371 535 aaKnown RBP18.86■□□□□ 0.61
SHQ1-202ENST00000444040 LRRFIP1Q32MZ4 808 aaKnown RBP18.86■□□□□ 0.61
SHQ1-202ENST00000444040 GORABQ5T7V8 394 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 SYNE4Q8N205 404 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 R3HCC1Q9Y3T6 440 aaKnown RBP18.86■□□□□ 0.61
SHQ1-202ENST00000444040 CDHR2Q9BYE9 1310 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 NR1I2O75469 434 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 KIAA2012Q0VF49 1180 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 HLFQ16534 295 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 ZNF830Q96NB3 372 aaPredicted RBP18.86■□□□□ 0.61
SHQ1-202ENST00000444040 CFAP45Q9UL16 551 aa18.86■□□□□ 0.61
SHQ1-202ENST00000444040 RIC1Q4ADV7 1423 aa18.85■□□□□ 0.61
SHQ1-202ENST00000444040 EVCP57679 992 aa18.85■□□□□ 0.61
SHQ1-202ENST00000444040 CHST3Q7LGC8 479 aa18.85■□□□□ 0.61
SHQ1-202ENST00000444040 NCOA5Q9HCD5 579 aaKnown RBP18.85■□□□□ 0.61
SHQ1-202ENST00000444040 RIPOR2Q9Y4F9 1068 aa18.85■□□□□ 0.61
SHQ1-202ENST00000444040 ABCC12Q96J65 1359 aa18.85■□□□□ 0.61
SHQ1-202ENST00000444040 ZAP70P43403 619 aa18.85■□□□□ 0.61
SHQ1-202ENST00000444040 CKAP2LQ8IYA6 745 aa18.85■□□□□ 0.61
SHQ1-202ENST00000444040 TAF7LQ5H9L4 462 aa18.84■□□□□ 0.61
SHQ1-202ENST00000444040 NLRP10Q86W26 655 aa18.84■□□□□ 0.61
SHQ1-202ENST00000444040 TTLL11Q8NHH1 800 aa18.84■□□□□ 0.61
SHQ1-202ENST00000444040 SLC4A9Q96Q91 983 aa18.84■□□□□ 0.61
SHQ1-202ENST00000444040 TTC12Q9H892 705 aaPredicted RBP18.84■□□□□ 0.61
SHQ1-202ENST00000444040 CTNNA3Q9UI47 895 aa18.84■□□□□ 0.61
SHQ1-202ENST00000444040 NWD2Q9ULI1 1742 aa18.84■□□□□ 0.61
SHQ1-202ENST00000444040 BICD2Q8TD16 824 aa18.83■□□□□ 0.61
SHQ1-202ENST00000444040 APPBP2Q92624 585 aa18.83■□□□□ 0.61
SHQ1-202ENST00000444040 PUS7LQ9H0K6 701 aaKnown RBP18.83■□□□□ 0.61
SHQ1-202ENST00000444040 FGAP02671 866 aa18.83■□□□□ 0.6
SHQ1-202ENST00000444040 WASHC4Q2M389 1173 aa18.83■□□□□ 0.6
SHQ1-202ENST00000444040 PI16Q6UXB8 463 aa18.83■□□□□ 0.6
SHQ1-202ENST00000444040 PIBF1Q8WXW3 757 aa18.83■□□□□ 0.6
SHQ1-202ENST00000444040 RCOR1Q9UKL0 485 aa18.83■□□□□ 0.6
SHQ1-202ENST00000444040 KIF3AQ9Y496 699 aa18.83■□□□□ 0.6
SHQ1-202ENST00000444040 NHSL1Q5SYE7 1610 aa18.83■□□□□ 0.6
SHQ1-202ENST00000444040 PLCB2Q00722 1185 aa18.82■□□□□ 0.6
SHQ1-202ENST00000444040 BTG4Q9NY30 223 aa18.82■□□□□ 0.6
SHQ1-202ENST00000444040 ITGA6P23229 1130 aa18.82■□□□□ 0.6
SHQ1-202ENST00000444040 GPTP24298 496 aa18.82■□□□□ 0.6
SHQ1-202ENST00000444040 ATP2B3Q16720 1220 aa18.82■□□□□ 0.6
SHQ1-202ENST00000444040 GREM2Q9H772 168 aa18.82■□□□□ 0.6
SHQ1-202ENST00000444040 DISP2A7MBM2 1401 aa18.82■□□□□ 0.6
SHQ1-202ENST00000444040 CYP19A1P11511 503 aaPredicted RBP18.82■□□□□ 0.6
SHQ1-202ENST00000444040 FDPSP14324 419 aaKnown RBP18.82■□□□□ 0.6
SHQ1-202ENST00000444040 IMMTQ16891 758 aaKnown RBP18.82■□□□□ 0.6
SHQ1-202ENST00000444040 GPHNQ9NQX3 736 aaPredicted RBP18.82■□□□□ 0.6
SHQ1-202ENST00000444040 BCL9O00512 1426 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 ANO6Q4KMQ2 910 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 LDHAL6AQ6ZMR3 332 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 MCAMP43121 646 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 FOSBP53539 338 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 HAND2P61296 217 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 METTL24Q5JXM2 366 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 LUZP1Q86V48 1076 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 MB21D2Q8IYB1 491 aaPredicted RBP18.81■□□□□ 0.6
SHQ1-202ENST00000444040 FTOQ9C0B1 505 aaKnown RBP eCLIP18.81■□□□□ 0.6
SHQ1-202ENST00000444040 ITGB4P16144 1822 aa18.81■□□□□ 0.6
SHQ1-202ENST00000444040 CARMIL3Q8ND23 1372 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 CTSWP56202 376 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 HSP90AB3PQ58FF7 597 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 ILDR1Q86SU0 546 aaPredicted RBP18.8■□□□□ 0.6
SHQ1-202ENST00000444040 VGLL2Q8N8G2 317 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 CHMP4CQ96CF2 233 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 CBX8Q9HC52 389 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.8■□□□□ 0.6
SHQ1-202ENST00000444040 LRP6O75581 1613 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 CEBPZQ03701 1054 aaKnown RBP18.8■□□□□ 0.6
SHQ1-202ENST00000444040 ATL3Q6DD88 541 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 ZNF512BQ96KM6 892 aaPredicted RBP18.8■□□□□ 0.6
SHQ1-202ENST00000444040 USP28Q96RU2 1077 aa18.8■□□□□ 0.6
SHQ1-202ENST00000444040 NAP1L2Q9ULW6 460 aaPredicted RBP18.8■□□□□ 0.6
SHQ1-202ENST00000444040 PPFIA3O75145 1194 aa18.79■□□□□ 0.6
SHQ1-202ENST00000444040 GPAA1O43292 621 aa18.79■□□□□ 0.6
SHQ1-202ENST00000444040 ZBTB1Q9Y2K1 713 aa18.79■□□□□ 0.6
SHQ1-202ENST00000444040 MYH15Q9Y2K3 1946 aa18.78■□□□□ 0.6
SHQ1-202ENST00000444040 ANKRD18BA2A2Z9 1011 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms