RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 PKD1L3Q7Z443 1732 aa6.84□□□□□ -1.31
PTPN4-206ENST00000441089 POLR3AO14802 1390 aaPredicted RBP6.84□□□□□ -1.31
PTPN4-206ENST00000441089 KRTAP9-6A0A140TA67 174 aa6.84□□□□□ -1.31
PTPN4-206ENST00000441089 CTCFP49711 727 aaPredicted RBP6.84□□□□□ -1.31
PTPN4-206ENST00000441089 SNRPNP63162 240 aaKnown RBP6.84□□□□□ -1.31
PTPN4-206ENST00000441089 LYSMD3Q7Z3D4 306 aa6.84□□□□□ -1.31
PTPN4-206ENST00000441089 ZBTB33Q86T24 672 aa6.84□□□□□ -1.31
PTPN4-206ENST00000441089 NUDT16Q96DE0 195 aaKnown RBP6.84□□□□□ -1.31
PTPN4-206ENST00000441089 ABHD8Q96I13 439 aa6.84□□□□□ -1.31
PTPN4-206ENST00000441089 RSPH6AQ9H0K4 717 aa6.84□□□□□ -1.31
PTPN4-206ENST00000441089 PXDNLA1KZ92 1463 aa6.84□□□□□ -1.31
PTPN4-206ENST00000441089 SPATA31E1Q6ZUB1 1445 aa6.84□□□□□ -1.32
PTPN4-206ENST00000441089 CLSPNQ9HAW4 1339 aa6.83□□□□□ -1.32
PTPN4-206ENST00000441089 KRBA1A5PL33 1030 aa6.83□□□□□ -1.32
PTPN4-206ENST00000441089 CSB-PGBD3P0DP91 1061 aa6.83□□□□□ -1.32
PTPN4-206ENST00000441089 BCRP11274 1271 aa6.83□□□□□ -1.32
PTPN4-206ENST00000441089 MSL1Q68DK7 614 aa6.83□□□□□ -1.32
PTPN4-206ENST00000441089 COL23A1Q86Y22 540 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-206ENST00000441089 AIDAQ96BJ3 306 aa6.83□□□□□ -1.32
PTPN4-206ENST00000441089 SIN3AQ96ST3 1273 aa6.83□□□□□ -1.32
PTPN4-206ENST00000441089 ACEP12821 1306 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 FOXN1O15353 648 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 THBS1P07996 1170 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 CFAP70Q5T0N1 1121 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 TRIM22Q8IYM9 498 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 Q8N3U1 123 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 GTPBP3Q969Y2 492 aaKnown RBP6.82□□□□□ -1.32
PTPN4-206ENST00000441089 CYLDQ9NQC7 956 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 ARFGEF1Q9Y6D6 1849 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 PPIP5K1Q6PFW1 1433 aa6.82□□□□□ -1.32
PTPN4-206ENST00000441089 SBF1O95248 1867 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 KIF13BQ9NQT8 1826 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 PHF20L1A8MW92 1017 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 K7ELQ4 463 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-206ENST00000441089 COL8A1P27658 744 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 C1orf229Q6ZS94 237 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-206ENST00000441089 ARHGAP27Q6ZUM4 889 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 KDM4CQ9H3R0 1056 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 RRAGCQ9HB90 399 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 CDV3Q9UKY7 258 aaKnown RBP6.81□□□□□ -1.32
PTPN4-206ENST00000441089 SLIT3O75094 1523 aa6.81□□□□□ -1.32
PTPN4-206ENST00000441089 TAF1LQ8IZX4 1826 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 A0A0C4DFX4 3053 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 ESPNB1AK53 854 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 SHISA8B8ZZ34 492 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 ITGB7P26010 798 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 BRCA1P38398 1863 aaKnown RBP6.8□□□□□ -1.32
PTPN4-206ENST00000441089 RNF144AP50876 292 aaPredicted RBP6.8□□□□□ -1.32
PTPN4-206ENST00000441089 CPSF1Q10570 1443 aaKnown RBP6.8□□□□□ -1.32
PTPN4-206ENST00000441089 BEND7Q8N7W2 519 aaPredicted RBP6.8□□□□□ -1.32
PTPN4-206ENST00000441089 NEDD1Q8NHV4 660 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 DDRGK1Q96HY6 314 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 HMX1Q9NP08 348 aaPredicted RBP6.8□□□□□ -1.32
PTPN4-206ENST00000441089 CCNL1Q9UK58 526 aaPredicted RBP6.8□□□□□ -1.32
PTPN4-206ENST00000441089 TRAK1Q9UPV9 953 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 C5P01031 1676 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 USP54Q70EL1 1684 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 KCPQ6ZWJ8 1503 aa6.8□□□□□ -1.32
PTPN4-206ENST00000441089 N4BP2Q86UW6 1770 aaPredicted RBP6.8□□□□□ -1.32
PTPN4-206ENST00000441089 CCDC85CA6NKD9 419 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 FURINP09958 794 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 IL2RBP14784 551 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 NEUROD1Q13562 356 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 C9orf131Q5VYM1 1079 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 RIPOR1Q6ZS17 1223 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 GALNT6Q8NCL4 622 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 ENAMQ9NRM1 1142 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 BCS1LQ9Y276 419 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 QRICH2Q9H0J4 1663 aa6.79□□□□□ -1.32
PTPN4-206ENST00000441089 ADGRB1O14514 1584 aa6.78□□□□□ -1.32
PTPN4-206ENST00000441089 ZEB1P37275 1124 aaPredicted RBP6.78□□□□□ -1.32
PTPN4-206ENST00000441089 KCNQ4P56696 695 aa6.78□□□□□ -1.32
PTPN4-206ENST00000441089 SH3D19Q5HYK7 790 aa6.78□□□□□ -1.32
PTPN4-206ENST00000441089 ARHGEF25Q86VW2 580 aa6.78□□□□□ -1.32
PTPN4-206ENST00000441089 KCNH5Q8NCM2 988 aa6.78□□□□□ -1.32
PTPN4-206ENST00000441089 PSMG3-AS1Q96PY0 264 aa6.78□□□□□ -1.32
PTPN4-206ENST00000441089 VIRMAQ69YN4 1812 aaKnown RBP6.78□□□□□ -1.32
PTPN4-206ENST00000441089 ZC3H4Q9UPT8 1303 aaKnown RBP6.77□□□□□ -1.32
PTPN4-206ENST00000441089 NSD3Q9BZ95 1437 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 UBR3Q6ZT12 1888 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 DOT1LQ8TEK3 1739 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 KIAA1551Q9HCM1 1747 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 VEGFAP15692 232 aaPredicted RBP6.77□□□□□ -1.33
PTPN4-206ENST00000441089 HOXB4P17483 251 aaPredicted RBP6.77□□□□□ -1.33
PTPN4-206ENST00000441089 LBX1P52954 281 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 TGFB2P61812 414 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 PTK2Q05397 1052 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 POU4F2Q12837 409 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 PROCA1Q8NCQ7 364 aaPredicted RBP6.77□□□□□ -1.33
PTPN4-206ENST00000441089 SYTL4Q96C24 671 aaPredicted RBP6.77□□□□□ -1.33
PTPN4-206ENST00000441089 CDK19Q9BWU1 502 aa6.77□□□□□ -1.33
PTPN4-206ENST00000441089 MKRN1Q9UHC7 482 aaKnown RBP6.77□□□□□ -1.33
PTPN4-206ENST00000441089 OIP5O43482 229 aa6.76□□□□□ -1.33
PTPN4-206ENST00000441089 SKIV2LQ15477 1246 aaKnown RBP6.76□□□□□ -1.33
PTPN4-206ENST00000441089 NBPF20Q3BBV1 942 aa6.76□□□□□ -1.33
PTPN4-206ENST00000441089 FAM117AQ9C073 453 aa6.76□□□□□ -1.33
PTPN4-206ENST00000441089 RNF181Q9P0P0 153 aa6.76□□□□□ -1.33
PTPN4-206ENST00000441089 ANKRD36BQ8N2N9 1353 aa6.76□□□□□ -1.33
PTPN4-206ENST00000441089 USP47Q96K76 1375 aa6.76□□□□□ -1.33
PTPN4-206ENST00000441089 CCDC88AQ3V6T2 1871 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms