RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 ZSCAN16Q9H4T2 348 aaPredicted RBP15.92■□□□□ 0.14
HERPUD1-204ENST00000439977 HELLSQ9NRZ9 838 aa15.92■□□□□ 0.14
HERPUD1-204ENST00000439977 CEP126Q9P2H0 1117 aa15.92■□□□□ 0.14
HERPUD1-204ENST00000439977 SIPA1L3O60292 1781 aaPredicted RBP15.92■□□□□ 0.14
HERPUD1-204ENST00000439977 MRC1P22897 1456 aa15.92■□□□□ 0.14
HERPUD1-204ENST00000439977 ARID5BQ14865 1188 aa15.91■□□□□ 0.14
HERPUD1-204ENST00000439977 C16orf45Q96MC5 204 aaPredicted RBP15.91■□□□□ 0.14
HERPUD1-204ENST00000439977 ZNF75DP51815 510 aa15.91■□□□□ 0.14
HERPUD1-204ENST00000439977 CCDC57Q2TAC2 916 aa15.91■□□□□ 0.14
HERPUD1-204ENST00000439977 ZNF710Q8N1W2 664 aa15.91■□□□□ 0.14
HERPUD1-204ENST00000439977 HMGB1P09429 215 aaKnown RBP15.91■□□□□ 0.14
HERPUD1-204ENST00000439977 DSCC1Q9BVC3 393 aa15.91■□□□□ 0.14
HERPUD1-204ENST00000439977 CCDC144BQ3MJ40 725 aa15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 CCDC144CPQ8IYA2 1237 aa15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 PRIMPOLQ96LW4 560 aa15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 CLIP2Q9UDT6 1046 aa15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 DENND2AQ9ULE3 1009 aa15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 RIOK3O14730 519 aaKnown RBP15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 TAF7LQ5H9L4 462 aa15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 TTC39AQ5SRH9 613 aa15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 ILDR1Q86SU0 546 aaPredicted RBP15.9■□□□□ 0.14
HERPUD1-204ENST00000439977 TRPM3Q9HCF6 1732 aaPredicted RBP15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 FDPSP14324 419 aaKnown RBP15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 RBM43Q6ZSC3 357 aaKnown RBP15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 XAGE2Q96GT9 111 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 KIF3AQ9Y496 699 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 A0A1B0GVL5 298 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 GOLGA6L19H0YKK7 550 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 GPTP24298 496 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 ZAP70P43403 619 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 HMGN5P82970 282 aaKnown RBP15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 FSIP1Q8NA03 581 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 CACTINQ8WUQ7 758 aaKnown RBP15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 PUS7LQ9H0K6 701 aaKnown RBP15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 MST1RQ04912 1400 aa15.89■□□□□ 0.13
HERPUD1-204ENST00000439977 FGAP02671 866 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 ZSCAN25Q6NSZ9 544 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 CCDC73Q6ZRK6 1079 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 CCDC191Q8NCU4 936 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 LLPHQ9BRT6 129 aaKnown RBP15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 RCOR1Q9UKL0 485 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 SNW1Q13573 536 aaKnown RBP15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 FOXP2O15409 715 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 KINO60870 393 aaKnown RBP15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 HSPA2P54652 639 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 CCDC158Q5M9N0 1113 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 NAA16Q6N069 864 aaPredicted RBP15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 FILIP1Q7Z7B0 1213 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 PLA2G4DQ86XP0 818 aa15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 TDRD7Q8NHU6 1098 aaKnown RBP15.88■□□□□ 0.13
HERPUD1-204ENST00000439977 PALLDQ8WX93 1383 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 SPATA31A3Q5VYP0 1347 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 BECN2A8MW95 431 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 RXRAP19793 462 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 BCL2L12Q9HB09 334 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 PRDM10Q9NQV6 1147 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 SCN11AQ9UI33 1791 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 KLF18A0A0U1RQI7 1052 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 CHAF1AQ13111 956 aaPredicted RBP15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 CLIC4Q9Y696 253 aa15.87■□□□□ 0.13
HERPUD1-204ENST00000439977 TPM3P06753 285 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 IQCB1Q15051 598 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 NKX2-3Q8TAU0 364 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 MAP7D2Q96T17 732 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 SDF4Q9BRK5 362 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 PCDHA7Q9UN72 937 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 CARMIL3Q8ND23 1372 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 ADAMTS7Q9UKP4 1686 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 CAMTA1Q9Y6Y1 1673 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 PRC1O43663 620 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 SF3A1Q15459 793 aaKnown RBP15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 ZNF592Q92610 1267 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 ASAP1Q9ULH1 1129 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 PCDH11XQ9BZA7 1347 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 PCDH11YQ9BZA8 1340 aa15.86■□□□□ 0.13
HERPUD1-204ENST00000439977 GOLGA8BA8MQT2 603 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 BIN1O00499 593 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 ISM2Q6H9L7 571 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 CADPS2Q86UW7 1296 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 AGXT2Q9BYV1 514 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 RFX7Q2KHR2 1363 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 IMMTQ16891 758 aaKnown RBP15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 DNAJC10Q8IXB1 793 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 AIFM3Q96NN9 605 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 GPR108Q9NPR9 543 aa15.85■□□□□ 0.13
HERPUD1-204ENST00000439977 APPP05067 770 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 ZNF274Q96GC6 653 aaPredicted RBP15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 ZNF396Q96N95 335 aaPredicted RBP15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 SALL1Q9NSC2 1324 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 AFDNP55196 1824 aaKnown RBP15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 NDUFA8P51970 172 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 AOPEPQ8N6M6 819 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 C8orf76Q96K31 380 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 ORC3Q9UBD5 711 aaPredicted RBP15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 CPLX1O14810 134 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 FAM160A1Q05DH4 1040 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 TCIRG1Q13488 830 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 NAA30Q147X3 362 aaPredicted RBP15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 STX1AQ16623 288 aa15.84■□□□□ 0.13
HERPUD1-204ENST00000439977 ENGASEQ8NFI3 743 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms