RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PDE4DIPQ5VU43 2346 aa15.39■□□□□ 0.05
PTPRF-208ENST00000437607 VAMP4O75379 141 aa15.38■□□□□ 0.05
PTPRF-208ENST00000437607 KIF23Q02241 960 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-208ENST00000437607 DGKZQ13574 1117 aa15.38■□□□□ 0.05
PTPRF-208ENST00000437607 RSBN1LQ6PCB5 846 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-208ENST00000437607 C2orf69Q8N8R5 385 aa15.38■□□□□ 0.05
PTPRF-208ENST00000437607 STK31Q9BXU1 1019 aa15.38■□□□□ 0.05
PTPRF-208ENST00000437607 LAMB1P07942 1786 aa15.37■□□□□ 0.05
PTPRF-208ENST00000437607 IGKV5-2P06315 115 aa15.37■□□□□ 0.05
PTPRF-208ENST00000437607 SLC10A3P09131 477 aa15.37■□□□□ 0.05
PTPRF-208ENST00000437607 ZNF157P51786 506 aaPredicted RBP15.37■□□□□ 0.05
PTPRF-208ENST00000437607 MLLT1Q03111 559 aaPredicted RBP15.37■□□□□ 0.05
PTPRF-208ENST00000437607 SCARF1Q14162 830 aa15.37■□□□□ 0.05
PTPRF-208ENST00000437607 ANGEL2Q5VTE6 544 aaKnown RBP15.37■□□□□ 0.05
PTPRF-208ENST00000437607 CCDC30Q5VVM6 783 aa15.37■□□□□ 0.05
PTPRF-208ENST00000437607 AGBL3Q8NEM8 1001 aa15.37■□□□□ 0.05
PTPRF-208ENST00000437607 XDHP47989 1333 aa15.37■□□□□ 0.05
PTPRF-208ENST00000437607 HSP90B1P14625 803 aaKnown RBP15.36■□□□□ 0.05
PTPRF-208ENST00000437607 SULF1Q8IWU6 871 aa15.36■□□□□ 0.05
PTPRF-208ENST00000437607 SSH1Q8WYL5 1049 aa15.36■□□□□ 0.05
PTPRF-208ENST00000437607 CCDC102AQ96A19 550 aa15.36■□□□□ 0.05
PTPRF-208ENST00000437607 SAGE1Q9NXZ1 904 aa15.36■□□□□ 0.05
PTPRF-208ENST00000437607 MAP3K2Q9Y2U5 619 aa15.36■□□□□ 0.05
PTPRF-208ENST00000437607 G3V3G9 751 aa15.35■□□□□ 0.05
PTPRF-208ENST00000437607 BCAR3O75815 825 aa15.35■□□□□ 0.05
PTPRF-208ENST00000437607 DCAF8Q5TAQ9 597 aa15.35■□□□□ 0.05
PTPRF-208ENST00000437607 ANKRD18AQ8IVF6 992 aa15.35■□□□□ 0.05
PTPRF-208ENST00000437607 TTLL11Q8NHH1 800 aa15.35■□□□□ 0.05
PTPRF-208ENST00000437607 CSRNP1Q96S65 589 aa15.35■□□□□ 0.05
PTPRF-208ENST00000437607 RNF186Q9NXI6 227 aa15.35■□□□□ 0.05
PTPRF-208ENST00000437607 SCAF8Q9UPN6 1271 aaKnown RBP15.35■□□□□ 0.05
PTPRF-208ENST00000437607 PI4KAP2A4QPH2 592 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 TRPA1O75762 1119 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 DDX58O95786 925 aaKnown RBP15.34■□□□□ 0.05
PTPRF-208ENST00000437607 ATP2B4P23634 1241 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 CTSWP56202 376 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 KSR2Q6VAB6 950 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 RASAL3Q86YV0 1011 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 PI4KAP1Q8N8J0 262 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 FRAT1Q92837 279 aaPredicted RBP15.34■□□□□ 0.05
PTPRF-208ENST00000437607 GREM2Q9H772 168 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 MYOZ2Q9NPC6 264 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 MINPP1Q9UNW1 487 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 MED23Q9ULK4 1368 aa15.34■□□□□ 0.05
PTPRF-208ENST00000437607 USP17L3A6NCW0 530 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 USP17L4A6NCW7 530 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 USP17L8P0C7I0 530 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 CWF19L2Q2TBE0 894 aaKnown RBP15.33■□□□□ 0.04
PTPRF-208ENST00000437607 MOB2Q70IA6 237 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 G2E3Q7L622 706 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 USP17L1Q7RTZ2 530 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 PODNQ7Z5L7 613 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 MXD3Q9BW11 206 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 PITPNM2Q9BZ72 1349 aa15.33■□□□□ 0.04
PTPRF-208ENST00000437607 NBPF9Q3BBW0 867 aa15.32■□□□□ 0.04
PTPRF-208ENST00000437607 DACT2Q5SW24 774 aa15.32■□□□□ 0.04
PTPRF-208ENST00000437607 MRPL50Q8N5N7 158 aaKnown RBP15.32■□□□□ 0.04
PTPRF-208ENST00000437607 CDC5LQ99459 802 aaKnown RBP15.32■□□□□ 0.04
PTPRF-208ENST00000437607 BSDC1Q9NW68 430 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-208ENST00000437607 NEURL1BA8MQ27 555 aa15.31■□□□□ 0.04
PTPRF-208ENST00000437607 IPO8O15397 1037 aaKnown RBP15.31■□□□□ 0.04
PTPRF-208ENST00000437607 SLC34A2O95436 690 aa15.31■□□□□ 0.04
PTPRF-208ENST00000437607 CCT4P50991 539 aaKnown RBP15.31■□□□□ 0.04
PTPRF-208ENST00000437607 ZKSCAN2Q63HK3 967 aa15.31■□□□□ 0.04
PTPRF-208ENST00000437607 TXNRD3Q86VQ6 643 aa15.31■□□□□ 0.04
PTPRF-208ENST00000437607 H7C1W4 665 aa15.3■□□□□ 0.04
PTPRF-208ENST00000437607 PLIN1O60240 522 aa15.3■□□□□ 0.04
PTPRF-208ENST00000437607 FKBP1BP68106 108 aa15.3■□□□□ 0.04
PTPRF-208ENST00000437607 PRAMEF18Q5VWM3 479 aa15.3■□□□□ 0.04
PTPRF-208ENST00000437607 FTSJ3Q8IY81 847 aaKnown RBP15.3■□□□□ 0.04
PTPRF-208ENST00000437607 PTPRCP08575 1304 aa15.29■□□□□ 0.04
PTPRF-208ENST00000437607 MS4A1P11836 297 aa15.29■□□□□ 0.04
PTPRF-208ENST00000437607 KLRK1P26718 216 aa15.29■□□□□ 0.04
PTPRF-208ENST00000437607 CASP7P55210 303 aa15.29■□□□□ 0.04
PTPRF-208ENST00000437607 HTTP42858 3142 aa15.29■□□□□ 0.04
PTPRF-208ENST00000437607 OTOFQ9HC10 1997 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 UBE2Q2LH0YL09 131 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 WNT10BO00744 389 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 NEXNQ0ZGT2 675 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 ATF7IPQ6VMQ6 1270 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 UBE3BQ7Z3V4 1068 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 API5Q9BZZ5 524 aaKnown RBP15.28■□□□□ 0.04
PTPRF-208ENST00000437607 NOB1Q9ULX3 412 aaKnown RBP15.28■□□□□ 0.04
PTPRF-208ENST00000437607 CENPFP49454 3210 aa15.28■□□□□ 0.04
PTPRF-208ENST00000437607 ARAP2Q8WZ64 1704 aa15.27■□□□□ 0.04
PTPRF-208ENST00000437607 IRX6P78412 446 aaPredicted RBP15.27■□□□□ 0.04
PTPRF-208ENST00000437607 FLIIQ13045 1269 aa15.27■□□□□ 0.04
PTPRF-208ENST00000437607 STRIP1Q5VSL9 837 aa15.27■□□□□ 0.04
PTPRF-208ENST00000437607 REM2Q8IYK8 340 aaPredicted RBP15.27■□□□□ 0.04
PTPRF-208ENST00000437607 PLA2G12BQ9BX93 195 aa15.27■□□□□ 0.04
PTPRF-208ENST00000437607 COA1Q9GZY4 146 aa15.27■□□□□ 0.04
PTPRF-208ENST00000437607 MYO3BQ8WXR4 1341 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 SASH1O94885 1247 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 CSF1RP07333 972 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 TRIM27P14373 513 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 ITGA6P23229 1130 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 SOX10P56693 466 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 FKBP5Q13451 457 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-208ENST00000437607 GCKRQ14397 625 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms