RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ZNF330Q9Y3S2 320 aaPredicted RBP13.89□□□□□ -0.19
CD44-209ENST00000433892 ERVV-2B6SEH9 535 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 NAA16Q6N069 864 aaPredicted RBP13.88□□□□□ -0.19
CD44-209ENST00000433892 OSBP2Q969R2 916 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 PRIMPOLQ96LW4 560 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 CCDC85AQ96PX6 553 aaPredicted RBP13.88□□□□□ -0.19
CD44-209ENST00000433892 LAMA4Q16363 1823 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 DCCP43146 1447 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.88□□□□□ -0.19
CD44-209ENST00000433892 CIAO1O76071 339 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 PDIA3P30101 505 aaKnown RBP13.88□□□□□ -0.19
CD44-209ENST00000433892 HMGN5P82970 282 aaKnown RBP13.88□□□□□ -0.19
CD44-209ENST00000433892 DRC7Q8IY82 874 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 TSC1Q92574 1164 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 TRIM5Q9C035 493 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 CEP126Q9P2H0 1117 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 WDR17Q8IZU2 1322 aa13.88□□□□□ -0.19
CD44-209ENST00000433892 ADORA1P30542 326 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 CCDC57Q2TAC2 916 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 GORABQ5T7V8 394 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 USP28Q96RU2 1077 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 GPHNQ9NQX3 736 aaPredicted RBP13.87□□□□□ -0.19
CD44-209ENST00000433892 CCDC186Q7Z3E2 898 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 CCAR1Q8IX12 1150 aaKnown RBP13.87□□□□□ -0.19
CD44-209ENST00000433892 TDRD7Q8NHU6 1098 aaKnown RBP13.87□□□□□ -0.19
CD44-209ENST00000433892 ATG3Q9NT62 314 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 NRBP1Q9UHY1 535 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 RCOR1Q9UKL0 485 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 KIF3AQ9Y496 699 aa13.87□□□□□ -0.19
CD44-209ENST00000433892 TJP1Q07157 1748 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 STRCP1A6NGW2 1772 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 NUP188Q5SRE5 1749 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 KCPQ6ZWJ8 1503 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 SALL1Q9NSC2 1324 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 ZNF75DP51815 510 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 HAND2P61296 217 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 WASHC4Q2M389 1173 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 MAP7D2Q96T17 732 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 GOLPH3LQ9H4A5 285 aa13.86□□□□□ -0.19
CD44-209ENST00000433892 PARP4Q9UKK3 1724 aaKnown RBP13.86□□□□□ -0.19
CD44-209ENST00000433892 LRMPQ12912 555 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 CCDC158Q5M9N0 1113 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 TTC39AQ5SRH9 613 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 PLA2G4DQ86XP0 818 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 VSIG10Q8N0Z9 540 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 ZNF274Q96GC6 653 aaPredicted RBP13.85□□□□□ -0.19
CD44-209ENST00000433892 XAGE2Q96GT9 111 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 ARID3AQ99856 593 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 SCARF1Q14162 830 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 HSP90AB3PQ58FF7 597 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 ILDR1Q86SU0 546 aaPredicted RBP13.85□□□□□ -0.19
CD44-209ENST00000433892 TICAM2Q86XR7 235 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 FAM89AQ96GI7 184 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 ISCA1Q9BUE6 129 aa13.85□□□□□ -0.19
CD44-209ENST00000433892 FAM177BA6PVY3 158 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 FOXP2O15409 715 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 IL2RBP14784 551 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 TCIRG1Q13488 830 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 SNW1Q13573 536 aaKnown RBP13.84□□□□□ -0.19
CD44-209ENST00000433892 NKX1-1Q15270 411 aaPredicted RBP13.84□□□□□ -0.19
CD44-209ENST00000433892 CARMIL3Q8ND23 1372 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 A0A087WWV3 80 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 FDPSP14324 419 aaKnown RBP13.84□□□□□ -0.19
CD44-209ENST00000433892 ME1P48163 572 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 PI16Q6UXB8 463 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 C11orf57Q6ZUT1 292 aaPredicted RBP13.84□□□□□ -0.19
CD44-209ENST00000433892 BRINP3Q76B58 766 aa13.84□□□□□ -0.19
CD44-209ENST00000433892 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.84□□□□□ -0.19
CD44-209ENST00000433892 ZNF396Q96N95 335 aaPredicted RBP13.84□□□□□ -0.19
CD44-209ENST00000433892 UBR2Q8IWV8 1755 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 FGAP02671 866 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 TAF7LQ5H9L4 462 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 CCDC73Q6ZRK6 1079 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 STRN4Q9NRL3 753 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 AKAP2Q9Y2D5 859 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 GTF2F1P35269 517 aaKnown RBP eCLIP13.83□□□□□ -0.2
CD44-209ENST00000433892 ZAP70P43403 619 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 IQCB1Q15051 598 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 IMMTQ16891 758 aaKnown RBP13.83□□□□□ -0.2
CD44-209ENST00000433892 OTUD7BQ6GQQ9 843 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 PUS7LQ9H0K6 701 aaKnown RBP13.83□□□□□ -0.2
CD44-209ENST00000433892 CLIP2Q9UDT6 1046 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 CTNNA3Q9UI47 895 aa13.83□□□□□ -0.2
CD44-209ENST00000433892 GOLGA6L19H0YKK7 550 aa13.82□□□□□ -0.2
CD44-209ENST00000433892 CTAGE5O15320 804 aa13.82□□□□□ -0.2
CD44-209ENST00000433892 KINO60870 393 aaKnown RBP13.82□□□□□ -0.2
CD44-209ENST00000433892 CAVIN2O95810 425 aa13.82□□□□□ -0.2
CD44-209ENST00000433892 ZSCAN25Q6NSZ9 544 aa13.82□□□□□ -0.2
CD44-209ENST00000433892 RAB11FIP4Q86YS3 637 aa13.82□□□□□ -0.2
CD44-209ENST00000433892 SYNE4Q8N205 404 aa13.82□□□□□ -0.2
CD44-209ENST00000433892 FSIP1Q8NA03 581 aa13.82□□□□□ -0.2
CD44-209ENST00000433892 ERCC4Q92889 916 aaPredicted RBP13.82□□□□□ -0.2
CD44-209ENST00000433892 FAM160A1Q05DH4 1040 aa13.81□□□□□ -0.2
CD44-209ENST00000433892 LRRFIP1Q32MZ4 808 aaKnown RBP13.81□□□□□ -0.2
CD44-209ENST00000433892 ATL3Q6DD88 541 aa13.81□□□□□ -0.2
CD44-209ENST00000433892 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.81□□□□□ -0.2
CD44-209ENST00000433892 MTERF4Q7Z6M4 381 aaKnown RBP13.81□□□□□ -0.2
CD44-209ENST00000433892 ENGASEQ8NFI3 743 aa13.81□□□□□ -0.2
CD44-209ENST00000433892 COL5A2P05997 1499 aaPredicted RBP13.81□□□□□ -0.2
CD44-209ENST00000433892 PRC1O43663 620 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms