RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 ANKRD18AQ8IVF6 992 aa31.8■■■□□ 2.68
LDB1-202ENST00000425280 TAF1P21675 1872 aa31.79■■■□□ 2.68
LDB1-202ENST00000425280 RNF20Q5VTR2 975 aa31.79■■■□□ 2.68
LDB1-202ENST00000425280 NOL8Q76FK4 1167 aaKnown RBP31.79■■■□□ 2.68
LDB1-202ENST00000425280 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.79■■■□□ 2.68
LDB1-202ENST00000425280 LRRFIP1Q32MZ4 808 aaKnown RBP31.79■■■□□ 2.68
LDB1-202ENST00000425280 ZSWIM6Q9HCJ5 1215 aa31.79■■■□□ 2.68
LDB1-202ENST00000425280 UQCRFS1P1P0C7P4 283 aa31.78■■■□□ 2.68
LDB1-202ENST00000425280 CPA1P15085 419 aa31.77■■■□□ 2.68
LDB1-202ENST00000425280 NLRP3Q96P20 1036 aa31.77■■■□□ 2.68
LDB1-202ENST00000425280 MAST3O60307 1309 aa31.77■■■□□ 2.68
LDB1-202ENST00000425280 ZFYP08048 801 aaPredicted RBP31.77■■■□□ 2.68
LDB1-202ENST00000425280 CUL4AQ13619 759 aa31.77■■■□□ 2.68
LDB1-202ENST00000425280 ZGPATQ8N5A5 531 aaKnown RBP31.77■■■□□ 2.68
LDB1-202ENST00000425280 HMG20BQ9P0W2 317 aa31.77■■■□□ 2.68
LDB1-202ENST00000425280 U3KPZ7 1027 aaPredicted RBP31.77■■■□□ 2.68
LDB1-202ENST00000425280 RPAP1Q9BWH6 1393 aaPredicted RBP31.76■■■□□ 2.68
LDB1-202ENST00000425280 RAB3GAP1Q15042 981 aa31.76■■■□□ 2.68
LDB1-202ENST00000425280 CCDC24Q8N4L8 307 aa31.76■■■□□ 2.68
LDB1-202ENST00000425280 BSDC1Q9NW68 430 aaPredicted RBP31.76■■■□□ 2.68
LDB1-202ENST00000425280 NFIXQ14938 502 aa31.76■■■□□ 2.67
LDB1-202ENST00000425280 CWC22Q9HCG8 908 aaKnown RBP31.76■■■□□ 2.67
LDB1-202ENST00000425280 MYH7P12883 1935 aa31.75■■■□□ 2.67
LDB1-202ENST00000425280 A0A1B0GUL6 1792 aa31.75■■■□□ 2.67
LDB1-202ENST00000425280 CYP2E1P05181 493 aaPredicted RBP31.75■■■□□ 2.67
LDB1-202ENST00000425280 AK2P54819 239 aa31.75■■■□□ 2.67
LDB1-202ENST00000425280 TSGA10IPQ3SY00 556 aa31.75■■■□□ 2.67
LDB1-202ENST00000425280 CYP46A1Q9Y6A2 500 aa31.75■■■□□ 2.67
LDB1-202ENST00000425280 TAF6LQ9Y6J9 622 aa31.75■■■□□ 2.67
LDB1-202ENST00000425280 CARMIL3Q8ND23 1372 aa31.75■■■□□ 2.67
LDB1-202ENST00000425280 M0R2C6 588 aa31.74■■■□□ 2.67
LDB1-202ENST00000425280 CELF1Q92879 486 aaKnown RBP31.74■■■□□ 2.67
LDB1-202ENST00000425280 OSBP2Q969R2 916 aa31.74■■■□□ 2.67
LDB1-202ENST00000425280 RUFY3Q7L099 469 aa31.74■■■□□ 2.67
LDB1-202ENST00000425280 PROM2Q8N271 834 aa31.74■■■□□ 2.67
LDB1-202ENST00000425280 TTF1Q15361 905 aaPredicted RBP31.73■■■□□ 2.67
LDB1-202ENST00000425280 DSCC1Q9BVC3 393 aa31.73■■■□□ 2.67
LDB1-202ENST00000425280 PSMA5P28066 241 aa31.72■■■□□ 2.67
LDB1-202ENST00000425280 TXNRD1Q16881 649 aa31.72■■■□□ 2.67
LDB1-202ENST00000425280 VPS53Q5VIR6 699 aa31.72■■■□□ 2.67
LDB1-202ENST00000425280 PDRG1Q9NUG6 133 aa31.72■■■□□ 2.67
LDB1-202ENST00000425280 PIH1D3Q9NQM4 214 aaKnown RBP31.72■■■□□ 2.67
LDB1-202ENST00000425280 TNPO1Q92973 898 aaKnown RBP31.71■■■□□ 2.67
LDB1-202ENST00000425280 DDX24Q9GZR7 859 aaKnown RBP eCLIP31.71■■■□□ 2.671e-12■■■■□ 23.4
LDB1-202ENST00000425280 MINPP1Q9UNW1 487 aa31.71■■■□□ 2.67
LDB1-202ENST00000425280 TNRC6CQ9HCJ0 1690 aaKnown RBP31.7■■■□□ 2.67
LDB1-202ENST00000425280 WASHC4Q2M389 1173 aa31.7■■■□□ 2.67
LDB1-202ENST00000425280 APPBP2Q92624 585 aa31.7■■■□□ 2.67
LDB1-202ENST00000425280 INTS4Q96HW7 963 aaKnown RBP31.7■■■□□ 2.67
LDB1-202ENST00000425280 HSPD1P10809 573 aaKnown RBP31.69■■■□□ 2.66
LDB1-202ENST00000425280 GYS1P13807 737 aa31.69■■■□□ 2.66
LDB1-202ENST00000425280 BCAMP50895 628 aa31.69■■■□□ 2.66
LDB1-202ENST00000425280 RASGRF1Q13972 1273 aa31.69■■■□□ 2.66
LDB1-202ENST00000425280 SPATA5Q8NB90 893 aa31.69■■■□□ 2.66
LDB1-202ENST00000425280 LIMCH1Q9UPQ0 1083 aa31.69■■■□□ 2.66
LDB1-202ENST00000425280 MYO5AQ9Y4I1 1855 aaKnown RBP31.69■■■□□ 2.66
LDB1-202ENST00000425280 RPS8P62241 208 aaKnown RBP31.69■■■□□ 2.66
LDB1-202ENST00000425280 NPHP1O15259 732 aa31.68■■■□□ 2.66
LDB1-202ENST00000425280 COL9A3Q14050 684 aaPredicted RBP31.68■■■□□ 2.66
LDB1-202ENST00000425280 CYP21A2P08686 494 aa31.68■■■□□ 2.66
LDB1-202ENST00000425280 TM4SF1P30408 202 aa31.68■■■□□ 2.66
LDB1-202ENST00000425280 MCM4P33991 863 aa31.68■■■□□ 2.66
LDB1-202ENST00000425280 ZSCAN25Q6NSZ9 544 aa31.68■■■□□ 2.66
LDB1-202ENST00000425280 ADD2P35612 726 aa31.67■■■□□ 2.66
LDB1-202ENST00000425280 KRT32Q14532 448 aa31.67■■■□□ 2.66
LDB1-202ENST00000425280 RXRBP28702 533 aa31.66■■■□□ 2.66
LDB1-202ENST00000425280 BLOC1S2Q6QNY1 142 aa31.66■■■□□ 2.66
LDB1-202ENST00000425280 CNBD1Q8NA66 436 aa31.66■■■□□ 2.66
LDB1-202ENST00000425280 LARP6Q9BRS8 491 aaKnown RBP31.66■■■□□ 2.66
LDB1-202ENST00000425280 PUS7LQ9H0K6 701 aaKnown RBP31.66■■■□□ 2.66
LDB1-202ENST00000425280 NUCB2P80303 420 aa31.66■■■□□ 2.66
LDB1-202ENST00000425280 UBE4AQ14139 1066 aa31.66■■■□□ 2.66
LDB1-202ENST00000425280 IDH1O75874 414 aaKnown RBP31.65■■■□□ 2.66
LDB1-202ENST00000425280 SLC9C2Q5TAH2 1124 aa31.65■■■□□ 2.66
LDB1-202ENST00000425280 RPS6KB1P23443 525 aa31.64■■■□□ 2.66
LDB1-202ENST00000425280 WTIPA6NIX2 430 aaPredicted RBP31.64■■■□□ 2.66
LDB1-202ENST00000425280 PLSCR1O15162 318 aa31.64■■■□□ 2.66
LDB1-202ENST00000425280 HMGB2P26583 209 aaKnown RBP31.64■■■□□ 2.66
LDB1-202ENST00000425280 DOCK2Q92608 1830 aa31.63■■■□□ 2.65
LDB1-202ENST00000425280 UBE3CQ15386 1083 aa31.63■■■□□ 2.65
LDB1-202ENST00000425280 PRR5LQ6MZQ0 368 aa31.63■■■□□ 2.65
LDB1-202ENST00000425280 FOXP2O15409 715 aa31.62■■■□□ 2.65
LDB1-202ENST00000425280 PKP1Q13835 747 aa31.62■■■□□ 2.65
LDB1-202ENST00000425280 ALDH8A1Q9H2A2 487 aaPredicted RBP31.62■■■□□ 2.65
LDB1-202ENST00000425280 WWC3Q9ULE0 1092 aa31.62■■■□□ 2.65
LDB1-202ENST00000425280 ZNF804BA4D1E1 1349 aa31.62■■■□□ 2.65
LDB1-202ENST00000425280 APBA3O96018 575 aa31.61■■■□□ 2.65
LDB1-202ENST00000425280 PDE6AP16499 860 aa31.61■■■□□ 2.65
LDB1-202ENST00000425280 NEK1Q96PY6 1258 aa31.61■■■□□ 2.65
LDB1-202ENST00000425280 ZNF532Q9HCE3 1301 aa31.6■■■□□ 2.65
LDB1-202ENST00000425280 GPAA1O43292 621 aa31.6■■■□□ 2.65
LDB1-202ENST00000425280 LARGE1O95461 756 aa31.6■■■□□ 2.65
LDB1-202ENST00000425280 TCRBV5S4A2TA0A5A2 114 aa31.6■■■□□ 2.65
LDB1-202ENST00000425280 GYG1P46976 350 aa31.6■■■□□ 2.65
LDB1-202ENST00000425280 STOX1Q6ZVD7 989 aa31.6■■■□□ 2.65
LDB1-202ENST00000425280 ZSCAN31Q96LW9 406 aaPredicted RBP31.6■■■□□ 2.65
LDB1-202ENST00000425280 A0A0G2JLW4 131 aa31.59■■■□□ 2.65
LDB1-202ENST00000425280 TCEANC2Q96MN5 208 aa31.59■■■□□ 2.65
LDB1-202ENST00000425280 SERPINB2P05120 415 aa31.58■■■□□ 2.65
LDB1-202ENST00000425280 GBP4Q96PP9 640 aa31.58■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms