RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 NFKBIEO00221 500 aa4.52□□□□□ -1.69
VPS41-206ENST00000418457 PDE2AO00408 941 aaPredicted RBP4.52□□□□□ -1.69
VPS41-206ENST00000418457 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.52□□□□□ -1.69
VPS41-206ENST00000418457 KIAA0319Q5VV43 1072 aa4.52□□□□□ -1.69
VPS41-206ENST00000418457 PI16Q6UXB8 463 aa4.52□□□□□ -1.69
VPS41-206ENST00000418457 TMEM102Q8N9M5 508 aaPredicted RBP4.52□□□□□ -1.69
VPS41-206ENST00000418457 FOXD4L4Q8WXT5 416 aaPredicted RBP4.52□□□□□ -1.69
VPS41-206ENST00000418457 DUSP9Q99956 384 aaKnown RBP4.52□□□□□ -1.69
VPS41-206ENST00000418457 SUV39H2Q9H5I1 410 aa4.52□□□□□ -1.69
VPS41-206ENST00000418457 LIN7BQ9HAP6 207 aa4.52□□□□□ -1.69
VPS41-206ENST00000418457 SPG7Q9UQ90 795 aa4.52□□□□□ -1.69
VPS41-206ENST00000418457 FAM177BA6PVY3 158 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 PTPRAP18433 802 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 DGKGP49619 791 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 AFF1P51825 1210 aaKnown RBP4.51□□□□□ -1.69
VPS41-206ENST00000418457 XPCQ01831 940 aaPredicted RBP4.51□□□□□ -1.69
VPS41-206ENST00000418457 TAGLNQ01995 201 aaKnown RBP4.51□□□□□ -1.69
VPS41-206ENST00000418457 GDF6Q6KF10 455 aaPredicted RBP4.51□□□□□ -1.69
VPS41-206ENST00000418457 C8orf86Q6ZUL3 223 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 CACTIN-AS1Q8N1I8 211 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 ASAP3Q8TDY4 903 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 NXPE3Q969Y0 559 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 FRMD6Q96NE9 622 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 HHIPQ96QV1 700 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 POP1Q99575 1024 aaKnown RBP4.51□□□□□ -1.69
VPS41-206ENST00000418457 BCO2Q9BYV7 579 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 LACRTQ9GZZ8 138 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 BCL11AQ9H165 835 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 PRDM6Q9NQX0 595 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 PPP4R2Q9NY27 417 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 PARP2Q9UGN5 583 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 TRIM33Q9UPN9 1127 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 TRAK1Q9UPV9 953 aa4.51□□□□□ -1.69
VPS41-206ENST00000418457 RBM47A0AV96 593 aaKnown RBP4.5□□□□□ -1.69
VPS41-206ENST00000418457 FAM181BA6NEQ2 426 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 PIK3R2O00459 728 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 GIPC1O14908 333 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 ZNF16P17020 682 aaPredicted RBP4.5□□□□□ -1.69
VPS41-206ENST00000418457 HOXB4P17483 251 aaPredicted RBP4.5□□□□□ -1.69
VPS41-206ENST00000418457 CDC27P30260 824 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 GNA15P30679 374 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 SNRPNP63162 240 aaKnown RBP4.5□□□□□ -1.69
VPS41-206ENST00000418457 PSMD2Q13200 908 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 GRM2Q14416 872 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 GRIK5Q16478 980 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 PODNQ7Z5L7 613 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 WFDC8Q8IUA0 241 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 CCNJLQ8IV13 435 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 TCF12Q99081 682 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 SRCIN1Q9C0H9 1055 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 BHLHE41Q9C0J9 482 aaPredicted RBP4.5□□□□□ -1.69
VPS41-206ENST00000418457 MKL2Q9ULH7 1088 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 ADAMTS8Q9UP79 889 aa4.5□□□□□ -1.69
VPS41-206ENST00000418457 A0A096LPE4 126 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 A0A1W2PPZ6 126 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 METTL12A8MUP2 240 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 NID1P14543 1247 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 ITGAEP38570 1179 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 CABP4P57796 275 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 DAB2P98082 770 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 COL9A3Q14050 684 aaPredicted RBP4.49□□□□□ -1.69
VPS41-206ENST00000418457 MSL1Q68DK7 614 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 PRPF40BQ6NWY9 871 aaKnown RBP4.49□□□□□ -1.69
VPS41-206ENST00000418457 NXPE4Q6UWF7 544 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 IL22RA1Q8N6P7 574 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 GLIS3Q8NEA6 775 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 BSNDQ8WZ55 320 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 OSBPL7Q9BZF2 842 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 ADAM19Q9H013 955 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 C12orf49Q9H741 205 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 MRS2Q9HD23 443 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 ABCB6Q9NP58 842 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 RNF19AQ9NV58 838 aa4.49□□□□□ -1.69
VPS41-206ENST00000418457 TMEM238LA0A1B0GVL6 79 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 GNB5O14775 395 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 SORBS3O60504 671 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 EIF4BP23588 611 aaKnown RBP4.48□□□□□ -1.69
VPS41-206ENST00000418457 GRIA4P48058 902 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 FCGRTP55899 365 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 SPRED3Q2MJR0 410 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 TRAPPC3LQ5T215 181 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 ADAMTSL4Q6UY14 1074 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 LINC00114Q6XXX2 140 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 DTHD1Q6ZMT9 781 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 TMC4Q7Z404 712 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 BEND7Q8N7W2 519 aaPredicted RBP4.48□□□□□ -1.69
VPS41-206ENST00000418457 SCARF2Q96GP6 870 aaPredicted RBP4.48□□□□□ -1.69
VPS41-206ENST00000418457 FAM161BQ96MY7 647 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 MUC3BQ9H195 1237 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 SH2B1Q9NRF2 756 aaPredicted RBP4.48□□□□□ -1.69
VPS41-206ENST00000418457 FAM8A1Q9UBU6 413 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 SOX13Q9UN79 622 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 PPME1Q9Y570 386 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 AK5Q9Y6K8 562 aa4.48□□□□□ -1.69
VPS41-206ENST00000418457 CNTNAP5Q8WYK1 1306 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 SPDYE3A6NKU9 549 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 H3BRJ5 948 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 USP17L7P0C7H9 530 aa4.47□□□□□ -1.69
VPS41-206ENST00000418457 XRCC5P13010 732 aaKnown RBP4.47□□□□□ -1.69
VPS41-206ENST00000418457 EPHA1P21709 976 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms