RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 ZMYM1Q5SVZ6 1142 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 DHX40Q8IX18 779 aaKnown RBP11.65□□□□□ -0.54
SS18-203ENST00000415083 GJB4Q9NTQ9 266 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 RCOR1Q9UKL0 485 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 DENND2AQ9ULE3 1009 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 XIRP1Q702N8 1843 aaKnown RBP11.65□□□□□ -0.54
SS18-203ENST00000415083 E7EWF7 191 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 CCT2P78371 535 aaKnown RBP11.65□□□□□ -0.54
SS18-203ENST00000415083 IFNL2Q8IZJ0 200 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 ANKRD7Q92527 254 aa11.65□□□□□ -0.54
SS18-203ENST00000415083 U3KPZ7 1027 aaPredicted RBP11.65□□□□□ -0.54
SS18-203ENST00000415083 SPEF2Q9C093 1822 aa11.65□□□□□ -0.55
SS18-203ENST00000415083 SCARF1Q14162 830 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 PLBD2Q8NHP8 589 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 RAPGEF4Q8WZA2 1011 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 OSBP2Q969R2 916 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 DDX19AQ9NUU7 478 aaKnown RBP11.64□□□□□ -0.55
SS18-203ENST00000415083 PTPDC1A2A3K4 754 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 PDIA3P30101 505 aaKnown RBP11.64□□□□□ -0.55
SS18-203ENST00000415083 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.64□□□□□ -0.553e-7■■□□□ 13.5
SS18-203ENST00000415083 HDAC5Q9UQL6 1122 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 A1BGP04217 495 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 DCAF5Q96JK2 942 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 PAG1Q9NWQ8 432 aa11.64□□□□□ -0.55
SS18-203ENST00000415083 TATP17735 454 aaPredicted RBP11.63□□□□□ -0.55
SS18-203ENST00000415083 GUCY1B3Q02153 619 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 OTUD7BQ6GQQ9 843 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 DHX32Q7L7V1 743 aaKnown RBP11.63□□□□□ -0.55
SS18-203ENST00000415083 ADORA1P30542 326 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 ZNF165P49910 485 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 FMNL2Q96PY5 1086 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 MAP7D2Q96T17 732 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 CCDC94Q9BW85 323 aaPredicted RBP11.63□□□□□ -0.55
SS18-203ENST00000415083 NBPF3Q9H094 633 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 HPS5Q9UPZ3 1129 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 KRT32Q14532 448 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 NBPF11Q86T75 865 aa11.63□□□□□ -0.55
SS18-203ENST00000415083 DSCC1Q9BVC3 393 aa11.62□□□□□ -0.55
SS18-203ENST00000415083 ANTXR2P58335 489 aa11.62□□□□□ -0.55
SS18-203ENST00000415083 CCAR1Q8IX12 1150 aaKnown RBP11.62□□□□□ -0.55
SS18-203ENST00000415083 CARMIL3Q8ND23 1372 aa11.62□□□□□ -0.55
SS18-203ENST00000415083 ZSCAN20P17040 1043 aaPredicted RBP11.61□□□□□ -0.55
SS18-203ENST00000415083 HSP90AB3PQ58FF7 597 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 NAA16Q6N069 864 aaPredicted RBP11.61□□□□□ -0.55
SS18-203ENST00000415083 PI16Q6UXB8 463 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 BICD2Q8TD16 824 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 EVCP57679 992 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 NCBP1Q09161 790 aaKnown RBP11.61□□□□□ -0.55
SS18-203ENST00000415083 PROSER2Q86WR7 435 aaPredicted RBP11.61□□□□□ -0.55
SS18-203ENST00000415083 LLPHQ9BRT6 129 aaKnown RBP11.61□□□□□ -0.55
SS18-203ENST00000415083 HELLSQ9NRZ9 838 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 KIF28PB7ZC32 967 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 HSP90B1P14625 803 aaKnown RBP11.61□□□□□ -0.55
SS18-203ENST00000415083 FMR1NBQ8N0W7 255 aaPredicted RBP11.61□□□□□ -0.55
SS18-203ENST00000415083 SYNE4Q8N205 404 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 KIF3AQ9Y496 699 aa11.61□□□□□ -0.55
SS18-203ENST00000415083 A0A1B0GUL7 405 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 CCZ1BP86790 482 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 CCZ1P86791 482 aaPredicted RBP11.6□□□□□ -0.55
SS18-203ENST00000415083 SARM1Q6SZW1 724 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 C16orf45Q96MC5 204 aaPredicted RBP11.6□□□□□ -0.55
SS18-203ENST00000415083 NEUROD6Q96NK8 337 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 ZSCAN16Q9H4T2 348 aaPredicted RBP11.6□□□□□ -0.55
SS18-203ENST00000415083 PCDHA7Q9UN72 937 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 CLIC4Q9Y696 253 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 TNS2Q63HR2 1409 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 PDIA4P13667 645 aaKnown RBP11.6□□□□□ -0.55
SS18-203ENST00000415083 TRIM5Q9C035 493 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 C19orf44Q9H6X5 657 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 RAB11FIP4Q86YS3 637 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 HSD3B7Q9H2F3 369 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 ZBTB3Q9H5J0 574 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 GPR108Q9NPR9 543 aa11.6□□□□□ -0.55
SS18-203ENST00000415083 RIC1Q4ADV7 1423 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 NHSL1Q5SYE7 1610 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 CDC25BP30305 580 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.59□□□□□ -0.55
SS18-203ENST00000415083 LRRC8AQ8IWT6 810 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 PUS7LQ9H0K6 701 aaKnown RBP11.59□□□□□ -0.55
SS18-203ENST00000415083 CLIP2Q9UDT6 1046 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 TNS3Q68CZ2 1445 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 SLIT2O94813 1529 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 ABCA3Q99758 1704 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 EYA2O00167 538 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 RNF113AO15541 343 aaKnown RBP11.59□□□□□ -0.55
SS18-203ENST00000415083 CABP4P57796 275 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 PPP4R3BQ5MIZ7 849 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 TTC5Q8N0Z6 440 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 FBXL16Q8N461 479 aa11.59□□□□□ -0.55
SS18-203ENST00000415083 H3BQV1 296 aa11.58□□□□□ -0.55
SS18-203ENST00000415083 NDUFA8P51970 172 aa11.58□□□□□ -0.55
SS18-203ENST00000415083 HAND2P61296 217 aa11.58□□□□□ -0.55
SS18-203ENST00000415083 IFFO2Q5TF58 517 aa11.58□□□□□ -0.55
SS18-203ENST00000415083 MB21D2Q8IYB1 491 aaPredicted RBP11.58□□□□□ -0.55
SS18-203ENST00000415083 BCL11BQ9C0K0 894 aaPredicted RBP11.58□□□□□ -0.55
SS18-203ENST00000415083 SENP2Q9HC62 589 aa11.58□□□□□ -0.55
SS18-203ENST00000415083 TACC3Q9Y6A5 838 aa11.58□□□□□ -0.55
SS18-203ENST00000415083 U2AF2P26368 475 aaKnown RBP eCLIP11.58□□□□□ -0.561e-7■■■□□ 16.4
SS18-203ENST00000415083 ZNF274Q96GC6 653 aaPredicted RBP11.58□□□□□ -0.56
SS18-203ENST00000415083 ZHX1Q9UKY1 873 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms