RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TNNI3KQ59H18 835 aa8.7□□□□□ -1.02
LIMA1-202ENST00000394943 GGA1Q9UJY5 639 aa8.7□□□□□ -1.02
LIMA1-202ENST00000394943 FPGT-TNNI3KV9GXZ4 949 aa8.7□□□□□ -1.02
LIMA1-202ENST00000394943 SIPA1L1O43166 1804 aa8.7□□□□□ -1.02
LIMA1-202ENST00000394943 LDHAL6AQ6ZMR3 332 aa8.7□□□□□ -1.02
LIMA1-202ENST00000394943 PODNQ7Z5L7 613 aa8.7□□□□□ -1.02
LIMA1-202ENST00000394943 ZNF594Q96JF6 807 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-202ENST00000394943 TTC41PQ6P2S7 1318 aa8.7□□□□□ -1.02
LIMA1-202ENST00000394943 IGHDP01880 384 aa8.69□□□□□ -1.02
LIMA1-202ENST00000394943 CCDC24Q8N4L8 307 aa8.69□□□□□ -1.02
LIMA1-202ENST00000394943 RHPN1Q8TCX5 695 aa8.69□□□□□ -1.02
LIMA1-202ENST00000394943 FAM84BQ96KN1 310 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-202ENST00000394943 TAOK3Q9H2K8 898 aa8.69□□□□□ -1.02
LIMA1-202ENST00000394943 PGAP2Q9UHJ9 254 aa8.69□□□□□ -1.02
LIMA1-202ENST00000394943 SLC51AQ86UW1 340 aa8.69□□□□□ -1.02
LIMA1-202ENST00000394943 RWDD1Q9H446 243 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-202ENST00000394943 PPP1R1BQ9UD71 204 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-202ENST00000394943 RPS12P25398 132 aaKnown RBP8.69□□□□□ -1.02
LIMA1-202ENST00000394943 ZNF280AP59817 542 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-202ENST00000394943 YDJCA8MPS7 323 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 C21orf2O43822 256 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 MAP4K4O95819 1239 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-202ENST00000394943 MYO3BQ8WXR4 1341 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 HDLBPQ00341 1268 aaKnown RBP8.68□□□□□ -1.02
LIMA1-202ENST00000394943 DPP8Q6V1X1 898 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-202ENST00000394943 ZNF622Q969S3 477 aaKnown RBP eCLIP8.68□□□□□ -1.026e-8■□□□□ 9.1
LIMA1-202ENST00000394943 FAM163AQ96GL9 167 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-202ENST00000394943 MPHOSPH8Q99549 860 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 SNRKQ9NRH2 765 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 PA2G4Q9UQ80 394 aaKnown RBP8.68□□□□□ -1.02
LIMA1-202ENST00000394943 GREB1LQ9C091 1923 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-202ENST00000394943 TFCP2Q12800 502 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 STRIP1Q5VSL9 837 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 CENPQQ7L2Z9 268 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-202ENST00000394943 DPF2Q92785 391 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 C1orf115Q9H7X2 142 aa8.68□□□□□ -1.02
LIMA1-202ENST00000394943 FAM177BA6PVY3 158 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 ATP5JP18859 108 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 TAOK2Q9UL54 1235 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 AGBL3Q8NEM8 1001 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 EAF2Q96CJ1 260 aaPredicted RBP8.67□□□□□ -1.02
LIMA1-202ENST00000394943 ZNRF3Q9ULT6 936 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 SLC5A1P13866 664 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 DACT2Q5SW24 774 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 KLHDC4Q8TBB5 520 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 PI4K2BQ8TCG2 481 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 LRRCC1Q9C099 1032 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 CD209Q9NNX6 404 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 MYH2Q9UKX2 1941 aa8.67□□□□□ -1.02
LIMA1-202ENST00000394943 NPM3O75607 178 aaKnown RBP8.66□□□□□ -1.02
LIMA1-202ENST00000394943 G3BP1Q13283 466 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMA1-202ENST00000394943 CEP126Q9P2H0 1117 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 DBNLQ9UJU6 430 aaKnown RBP8.66□□□□□ -1.02
LIMA1-202ENST00000394943 NAV1Q8NEY1 1877 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 TRPM7Q96QT4 1865 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 RPAP1Q9BWH6 1393 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-202ENST00000394943 UQCRFS1P1P0C7P4 283 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 ATP2B3Q16720 1220 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 OLFM4Q6UX06 510 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 TXNRD3Q86VQ6 643 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 GPC2Q8N158 579 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 GAKO14976 1311 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 A0A1B0GUL7 405 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 CNNM1Q9NRU3 951 aa8.66□□□□□ -1.02
LIMA1-202ENST00000394943 POTECB2RU33 542 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 KLRK1P26718 216 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 WASHC4Q2M389 1173 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 METTL24Q5JXM2 366 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 ZNF804AQ7Z570 1209 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 XAGE2Q96GT9 111 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 PPP4R2Q9NY27 417 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 UFL1O94874 794 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 IFIT1P09914 478 aaKnown RBP8.65□□□□□ -1.02
LIMA1-202ENST00000394943 RASSF7Q02833 373 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 RTL5Q5HYW3 569 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-202ENST00000394943 HAUS7Q99871 368 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 BCS1LQ9Y276 419 aa8.65□□□□□ -1.02
LIMA1-202ENST00000394943 ECE2O60344 883 aa8.65□□□□□ -1.03
LIMA1-202ENST00000394943 SURF6O75683 361 aaKnown RBP8.65□□□□□ -1.03
LIMA1-202ENST00000394943 DENND2AQ9ULE3 1009 aa8.65□□□□□ -1.03
LIMA1-202ENST00000394943 CCDC102BQ68D86 513 aa8.64□□□□□ -1.03
LIMA1-202ENST00000394943 TBC1D22AQ8WUA7 517 aa8.64□□□□□ -1.03
LIMA1-202ENST00000394943 WTIPA6NIX2 430 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-202ENST00000394943 HIBADHP31937 336 aaKnown RBP8.64□□□□□ -1.03
LIMA1-202ENST00000394943 CHD1LQ86WJ1 897 aa8.64□□□□□ -1.03
LIMA1-202ENST00000394943 PITPNM2Q9BZ72 1349 aa8.64□□□□□ -1.03
LIMA1-202ENST00000394943 GLTPD2A6NH11 291 aa8.64□□□□□ -1.03
LIMA1-202ENST00000394943 RSBN1LQ6PCB5 846 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-202ENST00000394943 ZNF541Q9H0D2 1346 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 PDE4AP27815 886 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 AOC3Q16853 763 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 PHIPQ8WWQ0 1821 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 TCRBV5S4A2TA0A5A2 114 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 NPHP1O15259 732 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 PLEKHM2Q8IWE5 1019 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 OTOFQ9HC10 1997 aa8.63□□□□□ -1.03
LIMA1-202ENST00000394943 USP17L3A6NCW0 530 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 USP17L4A6NCW7 530 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 TAF5LO75529 589 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 ADORA1P30542 326 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms