RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 NTSR2O95665 410 aa17.96■□□□□ 0.47
GPC3-202ENST00000394299 ZSCAN22P10073 491 aaPredicted RBP17.96■□□□□ 0.47
GPC3-202ENST00000394299 CHST3Q7LGC8 479 aa17.96■□□□□ 0.47
GPC3-202ENST00000394299 RTN4Q9NQC3 1192 aaKnown RBP17.96■□□□□ 0.47
GPC3-202ENST00000394299 SMARCC1Q92922 1105 aaPredicted RBP17.95■□□□□ 0.46
GPC3-202ENST00000394299 GRPEL1Q9HAV7 217 aa17.95■□□□□ 0.46
GPC3-202ENST00000394299 USP21Q9UK80 565 aa17.95■□□□□ 0.46
GPC3-202ENST00000394299 ANKRD36CQ5JPF3 1778 aa17.95■□□□□ 0.46
GPC3-202ENST00000394299 CCDC102BQ68D86 513 aa17.95■□□□□ 0.46
GPC3-202ENST00000394299 DSCC1Q9BVC3 393 aa17.95■□□□□ 0.46
GPC3-202ENST00000394299 HAND2P61296 217 aa17.94■□□□□ 0.46
GPC3-202ENST00000394299 C3orf67Q6ZVT6 689 aa17.94■□□□□ 0.46
GPC3-202ENST00000394299 USP48Q86UV5 1035 aa17.94■□□□□ 0.46
GPC3-202ENST00000394299 PIH1D3Q9NQM4 214 aaKnown RBP17.94■□□□□ 0.46
GPC3-202ENST00000394299 CNPY2Q9Y2B0 182 aa17.94■□□□□ 0.46
GPC3-202ENST00000394299 WTIPA6NIX2 430 aaPredicted RBP17.94■□□□□ 0.46
GPC3-202ENST00000394299 KRT32Q14532 448 aa17.94■□□□□ 0.46
GPC3-202ENST00000394299 MTMR6Q9Y217 621 aa17.94■□□□□ 0.46
GPC3-202ENST00000394299 ZSCAN23Q3MJ62 389 aa17.93■□□□□ 0.46
GPC3-202ENST00000394299 FNBP4Q8N3X1 1017 aaPredicted RBP17.93■□□□□ 0.46
GPC3-202ENST00000394299 BRF1Q92994 677 aa17.93■□□□□ 0.46
GPC3-202ENST00000394299 MPHOSPH8Q99549 860 aa17.93■□□□□ 0.46
GPC3-202ENST00000394299 TMEM63CQ9P1W3 806 aa17.93■□□□□ 0.46
GPC3-202ENST00000394299 NWD2Q9ULI1 1742 aa17.93■□□□□ 0.46
GPC3-202ENST00000394299 VPS37CA5D8V6 355 aaPredicted RBP17.93■□□□□ 0.46
GPC3-202ENST00000394299 E7EWF7 191 aa17.93■□□□□ 0.46
GPC3-202ENST00000394299 ALDH8A1Q9H2A2 487 aaPredicted RBP17.93■□□□□ 0.46
GPC3-202ENST00000394299 F13A1P00488 732 aa17.92■□□□□ 0.46
GPC3-202ENST00000394299 FGFR2P21802 821 aa17.92■□□□□ 0.46
GPC3-202ENST00000394299 ANKRD1Q15327 319 aa17.92■□□□□ 0.46
GPC3-202ENST00000394299 ERFEQ4G0M1 354 aa17.92■□□□□ 0.46
GPC3-202ENST00000394299 PARP10Q53GL7 1025 aa17.92■□□□□ 0.46
GPC3-202ENST00000394299 AMIGO3Q86WK7 504 aa17.92■□□□□ 0.46
GPC3-202ENST00000394299 ANO8Q9HCE9 1232 aaPredicted RBP17.92■□□□□ 0.46
GPC3-202ENST00000394299 JAK2O60674 1132 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 PPFIA3O75145 1194 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 IDH1O75874 414 aaKnown RBP17.91■□□□□ 0.46
GPC3-202ENST00000394299 MRE11P49959 708 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 SLC9C2Q5TAH2 1124 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 CCDC24Q8N4L8 307 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 MYH3P11055 1940 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 FGAP02671 866 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 HSP90B1P14625 803 aaKnown RBP17.91■□□□□ 0.46
GPC3-202ENST00000394299 PUM3Q15397 648 aaKnown RBP17.91■□□□□ 0.46
GPC3-202ENST00000394299 LARP1BQ659C4 914 aaKnown RBP17.91■□□□□ 0.46
GPC3-202ENST00000394299 FERMT3Q86UX7 667 aa17.91■□□□□ 0.46
GPC3-202ENST00000394299 SRP68Q9UHB9 627 aaKnown RBP17.91■□□□□ 0.46
GPC3-202ENST00000394299 FAM173BQ6P4H8 233 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 LPIN2Q92539 896 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 GPHNQ9NQX3 736 aaPredicted RBP17.9■□□□□ 0.46
GPC3-202ENST00000394299 MROH5Q6ZUA9 1318 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 TCHHQ07283 1943 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 FGD1P98174 961 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 APOBRQ0VD83 1088 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 CCDC152Q4G0S7 254 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 DHX32Q7L7V1 743 aaKnown RBP17.9■□□□□ 0.46
GPC3-202ENST00000394299 APPBP2Q92624 585 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 WWC3Q9ULE0 1092 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 EP400Q96L91 3159 aa17.9■□□□□ 0.46
GPC3-202ENST00000394299 COL4A1P02462 1669 aa17.89■□□□□ 0.46
GPC3-202ENST00000394299 GPAA1O43292 621 aa17.89■□□□□ 0.45
GPC3-202ENST00000394299 BCAMP50895 628 aa17.89■□□□□ 0.45
GPC3-202ENST00000394299 DNM1Q05193 864 aaKnown RBP17.89■□□□□ 0.45
GPC3-202ENST00000394299 TBC1D9BQ66K14 1250 aa17.89■□□□□ 0.45
GPC3-202ENST00000394299 CDC37L1Q7L3B6 337 aa17.89■□□□□ 0.45
GPC3-202ENST00000394299 BCL2L12Q9HB09 334 aa17.89■□□□□ 0.45
GPC3-202ENST00000394299 EXOSC10Q01780 885 aaKnown RBP17.89■□□□□ 0.45
GPC3-202ENST00000394299 DDX11Q96FC9 970 aa17.89■□□□□ 0.45
GPC3-202ENST00000394299 AK7Q96M32 723 aa17.89■□□□□ 0.45
GPC3-202ENST00000394299 ZFYP08048 801 aaPredicted RBP17.88■□□□□ 0.45
GPC3-202ENST00000394299 ADD2P35612 726 aa17.88■□□□□ 0.45
GPC3-202ENST00000394299 DENND2AQ9ULE3 1009 aa17.88■□□□□ 0.45
GPC3-202ENST00000394299 IQSEC3Q9UPP2 1182 aaPredicted RBP17.88■□□□□ 0.45
GPC3-202ENST00000394299 FIBPO43427 364 aa17.88■□□□□ 0.45
GPC3-202ENST00000394299 ARID4AP29374 1257 aaPredicted RBP17.88■□□□□ 0.45
GPC3-202ENST00000394299 SCRN1Q12765 414 aa17.88■□□□□ 0.45
GPC3-202ENST00000394299 RASGRF1Q13972 1273 aa17.88■□□□□ 0.45
GPC3-202ENST00000394299 GTF3C6Q969F1 213 aa17.88■□□□□ 0.45
GPC3-202ENST00000394299 AKAP11Q9UKA4 1901 aa17.87■□□□□ 0.45
GPC3-202ENST00000394299 ZNF532Q9HCE3 1301 aa17.87■□□□□ 0.45
GPC3-202ENST00000394299 IGHMBP2P38935 993 aaKnown RBP17.87■□□□□ 0.45
GPC3-202ENST00000394299 CCT2P78371 535 aaKnown RBP17.87■□□□□ 0.45
GPC3-202ENST00000394299 CHRNDQ07001 517 aa17.87■□□□□ 0.45
GPC3-202ENST00000394299 NKX2-3Q8TAU0 364 aa17.87■□□□□ 0.45
GPC3-202ENST00000394299 ZNF512BQ96KM6 892 aaPredicted RBP17.87■□□□□ 0.45
GPC3-202ENST00000394299 NAP1L2Q9ULW6 460 aaPredicted RBP17.87■□□□□ 0.45
GPC3-202ENST00000394299 ZNF652Q9Y2D9 606 aa17.87■□□□□ 0.45
GPC3-202ENST00000394299 SYCE3A1L190 88 aa17.87■□□□□ 0.45
GPC3-202ENST00000394299 SLC5A1P13866 664 aa17.87■□□□□ 0.45
GPC3-202ENST00000394299 LRRFIP1Q32MZ4 808 aaKnown RBP17.86■□□□□ 0.45
GPC3-202ENST00000394299 TICAM2Q86XR7 235 aa17.86■□□□□ 0.45
GPC3-202ENST00000394299 SPATA5Q8NB90 893 aa17.86■□□□□ 0.45
GPC3-202ENST00000394299 NCOA5Q9HCD5 579 aaKnown RBP17.86■□□□□ 0.45
GPC3-202ENST00000394299 GNPATO15228 680 aa17.86■□□□□ 0.45
GPC3-202ENST00000394299 PDE6AP16499 860 aa17.86■□□□□ 0.45
GPC3-202ENST00000394299 FOSBP53539 338 aa17.86■□□□□ 0.45
GPC3-202ENST00000394299 ZNF445P59923 1031 aa17.86■□□□□ 0.45
GPC3-202ENST00000394299 CLEC4GQ6UXB4 293 aa17.86■□□□□ 0.45
GPC3-202ENST00000394299 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.86■□□□□ 0.45
GPC3-202ENST00000394299 MYO5AQ9Y4I1 1855 aaKnown RBP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms