RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 STX6O43752 255 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 ESR2Q92731 530 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 PIDD1Q9HB75 910 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 NOP58Q9Y2X3 529 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 KIF7Q2M1P5 1343 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 IL15P40933 162 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 SYNE4Q8N205 404 aa10.63□□□□□ -0.71
LIMCH1-202ENST00000381753 ABCC1P33527 1531 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 GNAQP50148 359 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 SLC16A10Q8TF71 515 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 DEF6Q9H4E7 631 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 ZNF277Q9NRM2 450 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 MYO6Q9UM54 1294 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 VEGFAP15692 232 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 FCHSD1Q86WN1 690 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 MAGEB6Q8N7X4 407 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 FLOT1O75955 427 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 NAPAP54920 295 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 MAP7D2Q96T17 732 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 GPCPD1Q9NPB8 672 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 USP14P54578 494 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 ZNF790Q6PG37 636 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 METTL13Q8N6R0 699 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 SLC52A2Q9HAB3 445 aa10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 LUC7LQ9NQ29 371 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-202ENST00000381753 CALML3P27482 149 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 SLC8A3P57103 927 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 EIF4A2Q14240 407 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 EXOC6BQ9Y2D4 811 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 HARSP12081 509 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 MARCKSP29966 332 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 TTLL7Q6ZT98 887 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 APOBEC3FQ8IUX4 373 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 PROCA1Q8NCQ7 364 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 GOLGA1Q92805 767 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 ADAMTS12P58397 1594 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 VPS72Q15906 364 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 NOM1Q5C9Z4 860 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 ZNHIT6Q9NWK9 470 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 MAP3K5Q99683 1374 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 NEFHP12036 1026 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 PLEKHG3A1L390 1219 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 TRIM75PA6NK02 468 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 MYL3P08590 195 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 RARSP54136 660 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 GNPTABQ3T906 1256 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 SLC9C2Q5TAH2 1124 aa10.61□□□□□ -0.71
LIMCH1-202ENST00000381753 ABL1P00519 1130 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 PDCP20941 246 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 WDR63Q8IWG1 891 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 GCNAQ96QF7 691 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 USP8P40818 1118 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 NUP160Q12769 1436 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 KSR2Q6VAB6 950 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 EYA1Q99502 592 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 TCP11L1Q9NUJ3 509 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 POLIQ9UNA4 740 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 ARAP1Q96P48 1450 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 SRGAP2BP0DMP2 458 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 CCDC144CPQ8IYA2 1237 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 RNF34Q969K3 372 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 KRT23Q9C075 422 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 RNF216Q9NWF9 866 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 DKC1O60832 514 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 BBOX1O75936 387 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 USP17L8P0C7I0 530 aa10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 PHAXQ9H814 394 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 PRKRIP1Q9H875 184 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-202ENST00000381753 UGGT2Q9NYU1 1516 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 ARHGEF16Q5VV41 709 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 NAT10Q9H0A0 1025 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 CCDC148Q8NFR7 591 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 GCC1Q96CN9 775 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 ZSCAN20P17040 1043 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 CENPQQ7L2Z9 268 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 KINO60870 393 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 TAF5LO75529 589 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 ALAS1P13196 640 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 SLC1A4P43007 532 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 HAND2P61296 217 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 CFAP58Q5T655 872 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 CHURC1Q8WUH1 139 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 USP17L3A6NCW0 530 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 USP17L4A6NCW7 530 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 GNAT2P19087 354 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 WTAPQ15007 396 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 UTP14CQ5TAP6 766 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 USP17L1Q7RTZ2 530 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 CDAN1Q8IWY9 1227 aa10.59□□□□□ -0.71
LIMCH1-202ENST00000381753 PALLDQ8WX93 1383 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 DPYSL4O14531 572 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 PARP1P09874 1014 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 NLRX1Q86UT6 975 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 CCDC155Q8N6L0 562 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 SLITRK6Q9H5Y7 841 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 PIK3C2GO75747 1445 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 IGSF1Q8N6C5 1336 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 ELF1P32519 619 aa10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 SSTR3P32745 418 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-202ENST00000381753 PUM3Q15397 648 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms