RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 CTAGE8P0CG41 777 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 UBASH3AP57075 661 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 CTAGE6Q86UF2 777 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 USP48Q86UV5 1035 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 CTAGE4Q8IX94 777 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 LMBRD1Q9NUN5 540 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 UQCRHLA0A096LP55 91 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 VPS37CA5D8V6 355 aaPredicted RBP5.63□□□□□ -1.51
PCDH9-201ENST00000377861 UQCRHP07919 91 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 CNNM3Q8NE01 707 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 ZNF512BQ96KM6 892 aaPredicted RBP5.63□□□□□ -1.51
PCDH9-201ENST00000377861 MXD3Q9BW11 206 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 HNRNPLLQ8WVV9 542 aaKnown RBP5.63□□□□□ -1.51
PCDH9-201ENST00000377861 ARHGAP5Q13017 1502 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 F13A1P00488 732 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 ERMNQ8TAM6 284 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 ABCC2Q92887 1545 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 EIF5P55010 431 aaKnown RBP5.63□□□□□ -1.51
PCDH9-201ENST00000377861 MAP3K14Q99558 947 aa5.63□□□□□ -1.51
PCDH9-201ENST00000377861 PANX2Q96RD6 677 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 NEURL4Q96JN8 1562 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 HSPA6P17066 643 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 JAKMIP1Q96N16 626 aaKnown RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 SH3GLB2Q9NR46 395 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 PARP2Q9UGN5 583 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 NOS1P29475 1434 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 BCAP29Q9UHQ4 241 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 EZRP15311 586 aaKnown RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 IL13P35225 146 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 TMEM266Q2M3C6 531 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 IFT74Q96LB3 600 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 NSD3Q9BZ95 1437 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 TRIM75PA6NK02 468 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 TSG101Q99816 390 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 ANKRD2Q9GZV1 360 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 RTEL1Q9NZ71 1219 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 CCDC181Q5TID7 509 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 TMC4Q7Z404 712 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 NEO1Q92859 1461 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 DRP2Q13474 957 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 EIF3CLB5ME19 914 aaKnown RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 GFPT2O94808 682 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 ITIH3Q06033 890 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 EIF3CQ99613 913 aaKnown RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 ALDH3A1P30838 453 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 AACSQ86V21 672 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 PARP10Q53GL7 1025 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 ERCC3P19447 782 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 DKC1O60832 514 aaKnown RBP eCLIP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 CFAP100Q494V2 611 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 CARD10Q9BWT7 1032 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 VIPAS39Q9H9C1 493 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 RRP7AQ9Y3A4 280 aaKnown RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 DENND4BO75064 1496 aaPredicted RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 TRIM58Q8NG06 486 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 EXOC4Q96A65 974 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 LIFRP42702 1097 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 CCDC184Q52MB2 194 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 TMEM132EQ6IEE7 984 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 FOXP1Q9H334 677 aaPredicted RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 POLR3EQ9NVU0 708 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 CABP4P57796 275 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 RNF10Q8N5U6 811 aaKnown RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 RABGAP1Q9Y3P9 1069 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 RNASELQ05823 741 aaKnown RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 COPRSQ9NQ92 184 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 HAUS4Q9H6D7 363 aa5.62□□□□□ -1.51
PCDH9-201ENST00000377861 CWC25Q9NXE8 425 aaPredicted RBP5.62□□□□□ -1.51
PCDH9-201ENST00000377861 SMARCA1P28370 1054 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 SLC8A1P32418 973 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 CYP26C1Q6V0L0 522 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 SH2D4BQ5SQS7 431 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 KRI1Q8N9T8 703 aaKnown RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 TRIM35Q9UPQ4 493 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 MINK1Q8N4C8 1332 aaPredicted RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 CLGNO14967 610 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 UBA7P41226 1012 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 SOGA3Q5TF21 947 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 MAF1Q9H063 256 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 TBC1D7Q9P0N9 293 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 LUC7L2Q9Y383 392 aaKnown RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 ALX1Q15699 326 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 IFFO1Q0D2I5 559 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 LRRC45Q96CN5 670 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 NUP153P49790 1475 aaKnown RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 KRT18P05783 430 aaKnown RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 CCDC26Q8TAB7 109 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 CDK5RAP3Q96JB5 506 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 SRRM3A6NNA2 597 aaPredicted RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 GOLGA1Q92805 767 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 ATP2A1O14983 1001 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 EIF3BP55884 814 aaKnown RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 MTMR3Q13615 1198 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 SPTLC2O15270 562 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 FAM43BQ6ZT52 329 aaPredicted RBP5.61□□□□□ -1.51
PCDH9-201ENST00000377861 PPP1R42Q7Z4L9 355 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 TMOD4Q9NZQ9 345 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 KIAA1468Q9P260 1216 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 DNAI1Q9UI46 699 aa5.61□□□□□ -1.51
PCDH9-201ENST00000377861 ELL2O00472 640 aaPredicted RBP5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms