RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 KIF3AQ9Y496 699 aa29.75■■■□□ 2.35
C9orf40-201ENST00000376854 SOS2Q07890 1332 aaPredicted RBP29.75■■■□□ 2.35
C9orf40-201ENST00000376854 A0A0G2JLW4 131 aa29.74■■■□□ 2.35
C9orf40-201ENST00000376854 ERVV-2B6SEH9 535 aa29.74■■■□□ 2.35
C9orf40-201ENST00000376854 CCDC191Q8NCU4 936 aa29.74■■■□□ 2.35
C9orf40-201ENST00000376854 DNAJC25Q9H1X3 360 aa29.74■■■□□ 2.35
C9orf40-201ENST00000376854 MAST3O60307 1309 aa29.74■■■□□ 2.35
C9orf40-201ENST00000376854 RNF113AO15541 343 aaKnown RBP29.74■■■□□ 2.35
C9orf40-201ENST00000376854 CCT2P78371 535 aaKnown RBP29.74■■■□□ 2.35
C9orf40-201ENST00000376854 VSIG10Q8N0Z9 540 aa29.74■■■□□ 2.35
C9orf40-201ENST00000376854 A0A1B0GUL7 405 aa29.73■■■□□ 2.35
C9orf40-201ENST00000376854 TRIM5Q9C035 493 aa29.73■■■□□ 2.35
C9orf40-201ENST00000376854 SLAIN2Q9P270 581 aa29.73■■■□□ 2.35
C9orf40-201ENST00000376854 IL2RBP14784 551 aa29.73■■■□□ 2.35
C9orf40-201ENST00000376854 GTF2F1P35269 517 aaKnown RBP eCLIP29.73■■■□□ 2.35
C9orf40-201ENST00000376854 NAP1L2Q9ULW6 460 aaPredicted RBP29.73■■■□□ 2.35
C9orf40-201ENST00000376854 DRC7Q8IY82 874 aa29.72■■■□□ 2.35
C9orf40-201ENST00000376854 NCOA5Q9HCD5 579 aaKnown RBP29.72■■■□□ 2.35
C9orf40-201ENST00000376854 UBR2Q8IWV8 1755 aa29.72■■■□□ 2.35
C9orf40-201ENST00000376854 CIAO1O76071 339 aa29.72■■■□□ 2.35
C9orf40-201ENST00000376854 ZNF75DP51815 510 aa29.72■■■□□ 2.35
C9orf40-201ENST00000376854 PLA2G4DQ86XP0 818 aa29.72■■■□□ 2.35
C9orf40-201ENST00000376854 RCOR1Q9UKL0 485 aa29.72■■■□□ 2.35
C9orf40-201ENST00000376854 NKX1-1Q15270 411 aaPredicted RBP29.71■■■□□ 2.35
C9orf40-201ENST00000376854 FTOQ9C0B1 505 aaKnown RBP eCLIP29.71■■■□□ 2.35
C9orf40-201ENST00000376854 CCDC186Q7Z3E2 898 aa29.71■■■□□ 2.35
C9orf40-201ENST00000376854 ATG3Q9NT62 314 aa29.71■■■□□ 2.35
C9orf40-201ENST00000376854 CAVIN2O95810 425 aa29.7■■■□□ 2.35
C9orf40-201ENST00000376854 CCAR1Q8IX12 1150 aaKnown RBP29.7■■■□□ 2.35
C9orf40-201ENST00000376854 CARD10Q9BWT7 1032 aa29.7■■■□□ 2.35
C9orf40-201ENST00000376854 PUS3Q9BZE2 481 aaKnown RBP29.7■■■□□ 2.35
C9orf40-201ENST00000376854 NUP188Q5SRE5 1749 aa29.7■■■□□ 2.34
C9orf40-201ENST00000376854 LAMA4Q16363 1823 aa29.7■■■□□ 2.34
C9orf40-201ENST00000376854 M0R2C6 588 aa29.7■■■□□ 2.34
C9orf40-201ENST00000376854 PDIA3P30101 505 aaKnown RBP29.7■■■□□ 2.34
C9orf40-201ENST00000376854 CHST3Q7LGC8 479 aa29.7■■■□□ 2.34
C9orf40-201ENST00000376854 ARHGAP30Q7Z6I6 1101 aaPredicted RBP29.7■■■□□ 2.34
C9orf40-201ENST00000376854 SALL1Q9NSC2 1324 aa29.69■■■□□ 2.34
C9orf40-201ENST00000376854 ZNF274Q96GC6 653 aaPredicted RBP29.69■■■□□ 2.34
C9orf40-201ENST00000376854 ZNF335Q9H4Z2 1342 aaPredicted RBP29.69■■■□□ 2.34
C9orf40-201ENST00000376854 TJP1Q07157 1748 aa29.69■■■□□ 2.34
C9orf40-201ENST00000376854 ZNF396Q96N95 335 aaPredicted RBP29.68■■■□□ 2.34
C9orf40-201ENST00000376854 PPIL4Q8WUA2 492 aaKnown RBP eCLIP29.68■■■□□ 2.34
C9orf40-201ENST00000376854 USP28Q96RU2 1077 aa29.68■■■□□ 2.34
C9orf40-201ENST00000376854 ATL3Q6DD88 541 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 TSC1Q92574 1164 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 CEP126Q9P2H0 1117 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 SHANK3Q9BYB0 1731 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 CTAGE5O15320 804 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 PPFIA3O75145 1194 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 FKBP4Q02790 459 aaKnown RBP eCLIP29.67■■■□□ 2.34
C9orf40-201ENST00000376854 TTLL5Q6EMB2 1281 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 GOLPH3LQ9H4A5 285 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 NRBP1Q9UHY1 535 aa29.67■■■□□ 2.34
C9orf40-201ENST00000376854 PAPPAQ13219 1627 aa29.66■■■□□ 2.34
C9orf40-201ENST00000376854 CHAF1AQ13111 956 aaPredicted RBP29.66■■■□□ 2.34
C9orf40-201ENST00000376854 OSBP2Q969R2 916 aa29.66■■■□□ 2.34
C9orf40-201ENST00000376854 CCDC73Q6ZRK6 1079 aa29.66■■■□□ 2.34
C9orf40-201ENST00000376854 GUCY1B3Q02153 619 aa29.65■■■□□ 2.34
C9orf40-201ENST00000376854 CHMP4CQ96CF2 233 aa29.65■■■□□ 2.34
C9orf40-201ENST00000376854 TNS2Q63HR2 1409 aa29.64■■■□□ 2.34
C9orf40-201ENST00000376854 EVA1CP58658 441 aa29.64■■■□□ 2.34
C9orf40-201ENST00000376854 LRMPQ12912 555 aa29.64■■■□□ 2.34
C9orf40-201ENST00000376854 CCDC57Q2TAC2 916 aa29.64■■■□□ 2.34
C9orf40-201ENST00000376854 CCDC158Q5M9N0 1113 aa29.64■■■□□ 2.34
C9orf40-201ENST00000376854 ZNF330Q9Y3S2 320 aaPredicted RBP29.64■■■□□ 2.34
C9orf40-201ENST00000376854 SNW1Q13573 536 aaKnown RBP29.63■■■□□ 2.33
C9orf40-201ENST00000376854 LRRFIP1Q32MZ4 808 aaKnown RBP29.63■■■□□ 2.33
C9orf40-201ENST00000376854 GORABQ5T7V8 394 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 CLIP2Q9UDT6 1046 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 CARMIL3Q8ND23 1372 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 ABCA3Q99758 1704 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 GOLGA6L19H0YKK7 550 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 IQCB1Q15051 598 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 STX1AQ16623 288 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 TTC39AQ5SRH9 613 aa29.63■■■□□ 2.33
C9orf40-201ENST00000376854 C11orf57Q6ZUT1 292 aaPredicted RBP29.63■■■□□ 2.33
C9orf40-201ENST00000376854 ZSCAN25Q6NSZ9 544 aa29.62■■■□□ 2.33
C9orf40-201ENST00000376854 ILDR1Q86SU0 546 aaPredicted RBP29.62■■■□□ 2.33
C9orf40-201ENST00000376854 SPEF2Q9C093 1822 aa29.62■■■□□ 2.33
C9orf40-201ENST00000376854 ME1P48163 572 aa29.62■■■□□ 2.33
C9orf40-201ENST00000376854 FBXL16Q8N461 479 aa29.62■■■□□ 2.33
C9orf40-201ENST00000376854 CTNNA3Q9UI47 895 aa29.62■■■□□ 2.33
C9orf40-201ENST00000376854 KINO60870 393 aaKnown RBP29.61■■■□□ 2.33
C9orf40-201ENST00000376854 ADORA1P30542 326 aa29.61■■■□□ 2.33
C9orf40-201ENST00000376854 WASHC4Q2M389 1173 aa29.61■■■□□ 2.33
C9orf40-201ENST00000376854 ISCA1Q9BUE6 129 aa29.61■■■□□ 2.33
C9orf40-201ENST00000376854 AKAP2Q9Y2D5 859 aa29.61■■■□□ 2.33
C9orf40-201ENST00000376854 FAM160A1Q05DH4 1040 aa29.61■■■□□ 2.33
C9orf40-201ENST00000376854 ZNF710Q8N1W2 664 aa29.61■■■□□ 2.33
C9orf40-201ENST00000376854 XAGE2Q96GT9 111 aa29.61■■■□□ 2.33
C9orf40-201ENST00000376854 STRCQ7RTU9 1775 aa29.6■■■□□ 2.33
C9orf40-201ENST00000376854 FDPSP14324 419 aaKnown RBP29.6■■■□□ 2.33
C9orf40-201ENST00000376854 CDC25BP30305 580 aa29.6■■■□□ 2.33
C9orf40-201ENST00000376854 EVCP57679 992 aa29.6■■■□□ 2.33
C9orf40-201ENST00000376854 ENGASEQ8NFI3 743 aa29.6■■■□□ 2.33
C9orf40-201ENST00000376854 ARID3AQ99856 593 aa29.6■■■□□ 2.33
C9orf40-201ENST00000376854 TOGARAM1Q9Y4F4 1720 aa29.6■■■□□ 2.33
C9orf40-201ENST00000376854 GPHNQ9NQX3 736 aaPredicted RBP29.6■■■□□ 2.33
C9orf40-201ENST00000376854 MYH15Q9Y2K3 1946 aa29.6■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms