RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 SHANK2Q9UPX8 1470 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 PRPF4BQ13523 1007 aaKnown RBP18.15■□□□□ 0.5
COL17A1-202ENST00000369733 TAOK3Q9H2K8 898 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 GUCA1BQ9UMX6 200 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 IRX3P78415 501 aaPredicted RBP18.15■□□□□ 0.5
COL17A1-202ENST00000369733 CCDC91Q7Z6B0 441 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 GPT2Q8TD30 523 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 EXOC1Q9NV70 894 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 AMOTL2Q9Y2J4 779 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 TACC1O75410 805 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 TUBBP07437 444 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 KRT83P78385 493 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 PAG1Q9NWQ8 432 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 CETN2P41208 172 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 RTN1Q16799 776 aa18.15■□□□□ 0.5
COL17A1-202ENST00000369733 KRT86O43790 486 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 G2E3Q7L622 706 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 KIF5BP33176 963 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 STAT6P42226 847 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 STX17P56962 302 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 LEO1Q8WVC0 666 aaPredicted RBP18.14■□□□□ 0.49
COL17A1-202ENST00000369733 TMOD3Q9NYL9 352 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 ZNF444Q8N0Y2 327 aaPredicted RBP18.14■□□□□ 0.49
COL17A1-202ENST00000369733 KRT23Q9C075 422 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 WDR62O43379 1518 aa18.14■□□□□ 0.49
COL17A1-202ENST00000369733 FOXO3O43524 673 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 PKP1Q13835 747 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 ANKLE2Q86XL3 938 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 XAGE3Q8WTP9 111 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 CARD6Q9BX69 1037 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 AOX1Q06278 1338 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 SGSM2O43147 1006 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 SLC27A2O14975 620 aa18.13■□□□□ 0.49
COL17A1-202ENST00000369733 GSPT1P15170 499 aaKnown RBP18.13■□□□□ 0.49
COL17A1-202ENST00000369733 ELP1O95163 1332 aa18.12■□□□□ 0.49
COL17A1-202ENST00000369733 OTUD6BQ8N6M0 293 aa18.12■□□□□ 0.49
COL17A1-202ENST00000369733 ANTXR1Q9H6X2 564 aa18.12■□□□□ 0.49
COL17A1-202ENST00000369733 SNRPA1P09661 255 aaKnown RBP18.12■□□□□ 0.49
COL17A1-202ENST00000369733 KIF5AQ12840 1032 aa18.12■□□□□ 0.49
COL17A1-202ENST00000369733 AKR1B15C9JRZ8 316 aaPredicted RBP18.12■□□□□ 0.49
COL17A1-202ENST00000369733 IFI16Q16666 785 aaKnown RBP18.12■□□□□ 0.49
COL17A1-202ENST00000369733 BICDL1Q6ZP65 573 aa18.12■□□□□ 0.49
COL17A1-202ENST00000369733 IMPACTQ9P2X3 320 aa18.12■□□□□ 0.49
COL17A1-202ENST00000369733 COPS6Q7L5N1 327 aa18.12■□□□□ 0.49
COL17A1-202ENST00000369733 CTNNBL1Q8WYA6 563 aaPredicted RBP18.12■□□□□ 0.49
COL17A1-202ENST00000369733 GPTP24298 496 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 TCERG1LQ5VWI1 586 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 DZIP1Q86YF9 867 aaKnown RBP18.11■□□□□ 0.49
COL17A1-202ENST00000369733 FAM76AQ8TAV0 307 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 RIMS2Q9UQ26 1411 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 A0A1B0GUL7 405 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 PSMA7O14818 248 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 LMBR1LQ6UX01 489 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 CNNM2Q9H8M5 875 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.11■□□□□ 0.49
COL17A1-202ENST00000369733 LINS1Q8NG48 757 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 TRIM75PA6NK02 468 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 RNF113AO15541 343 aaKnown RBP18.11■□□□□ 0.49
COL17A1-202ENST00000369733 POTEJP0CG39 1038 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 UBXN1Q04323 297 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 UBE4AQ14139 1066 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 CWF19L2Q2TBE0 894 aaKnown RBP18.11■□□□□ 0.49
COL17A1-202ENST00000369733 TMTC2Q8N394 836 aa18.11■□□□□ 0.49
COL17A1-202ENST00000369733 FANCCQ00597 558 aa18.1■□□□□ 0.49
COL17A1-202ENST00000369733 CDC37L1Q7L3B6 337 aa18.1■□□□□ 0.49
COL17A1-202ENST00000369733 CNGA4Q8IV77 575 aa18.1■□□□□ 0.49
COL17A1-202ENST00000369733 NUTM2AQ8IVF1 878 aaPredicted RBP18.1■□□□□ 0.49
COL17A1-202ENST00000369733 ZNF608Q9ULD9 1512 aaPredicted RBP18.1■□□□□ 0.49
COL17A1-202ENST00000369733 IL15P40933 162 aaPredicted RBP18.1■□□□□ 0.49
COL17A1-202ENST00000369733 DNAJC21Q5F1R6 531 aaKnown RBP18.1■□□□□ 0.49
COL17A1-202ENST00000369733 KAT14Q9H8E8 782 aa18.1■□□□□ 0.49
COL17A1-202ENST00000369733 MPHOSPH10O00566 681 aaKnown RBP18.09■□□□□ 0.49
COL17A1-202ENST00000369733 DTNBO60941 627 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 UQCRFS1P1P0C7P4 283 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 CCDC121Q6ZUS5 278 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 TTC21AQ8NDW8 1320 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 PLCH2O75038 1416 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 TSPY2A6NKD2 308 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 ZEB2O60315 1214 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 IFNL2Q8IZJ0 200 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 NBPF7P0C2Y1 421 aaPredicted RBP18.09■□□□□ 0.49
COL17A1-202ENST00000369733 CHMP4BP1P59074 171 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 ZSCAN29Q8IWY8 852 aaPredicted RBP18.09■□□□□ 0.49
COL17A1-202ENST00000369733 SPTY2D1Q68D10 685 aaPredicted RBP18.09■□□□□ 0.49
COL17A1-202ENST00000369733 CCDC42Q96M95 316 aa18.09■□□□□ 0.49
COL17A1-202ENST00000369733 TFCP2Q12800 502 aa18.08■□□□□ 0.49
COL17A1-202ENST00000369733 MSL1Q68DK7 614 aa18.08■□□□□ 0.49
COL17A1-202ENST00000369733 KRI1Q8N9T8 703 aaKnown RBP18.08■□□□□ 0.49
COL17A1-202ENST00000369733 ABCC1P33527 1531 aa18.08■□□□□ 0.48
COL17A1-202ENST00000369733 TRMT2AQ8IZ69 625 aaKnown RBP18.08■□□□□ 0.48
COL17A1-202ENST00000369733 AFAP1L1Q8TED9 768 aa18.08■□□□□ 0.48
COL17A1-202ENST00000369733 RBM5P52756 815 aaKnown RBP eCLIP18.08■□□□□ 0.48
COL17A1-202ENST00000369733 LLPHQ9BRT6 129 aaKnown RBP18.08■□□□□ 0.48
COL17A1-202ENST00000369733 KIAA0753Q2KHM9 967 aa18.07■□□□□ 0.48
COL17A1-202ENST00000369733 CCDC155Q8N6L0 562 aa18.07■□□□□ 0.48
COL17A1-202ENST00000369733 LRRC27Q9C0I9 530 aa18.07■□□□□ 0.48
COL17A1-202ENST00000369733 SLC9C2Q5TAH2 1124 aa18.07■□□□□ 0.48
COL17A1-202ENST00000369733 CEP57Q86XR8 500 aa18.07■□□□□ 0.48
COL17A1-202ENST00000369733 NPATQ14207 1427 aa18.07■□□□□ 0.48
COL17A1-202ENST00000369733 PDE4BQ07343 736 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms