RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 NYXQ9GZU5 481 aa13.18□□□□□ -0.3
SVIP-201ENST00000354193 DDX11L8A8MPP1 907 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 GPAA1O43292 621 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 TRIM28Q13263 835 aaKnown RBP13.17□□□□□ -0.3
SVIP-201ENST00000354193 CAVIN1Q6NZI2 390 aaKnown RBP13.17□□□□□ -0.3
SVIP-201ENST00000354193 ARMT1Q9H993 441 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.17□□□□□ -0.3
SVIP-201ENST00000354193 RXRBP28702 533 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 ZSCAN25Q6NSZ9 544 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 ZNF34Q8IZ26 560 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 MBD4O95243 580 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 MCAMP43121 646 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 Q6ZUG5 572 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 C3orf67Q6ZVT6 689 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 NUP133Q8WUM0 1156 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 TNS2Q63HR2 1409 aa13.17□□□□□ -0.3
SVIP-201ENST00000354193 ZNF532Q9HCE3 1301 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 ATP2B1P20020 1258 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 ST5P78524 1137 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 DZIP1Q86YF9 867 aaKnown RBP13.16□□□□□ -0.3
SVIP-201ENST00000354193 OSBP2Q969R2 916 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 SALL3Q9BXA9 1300 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 PXDNLA1KZ92 1463 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 GOLGB1Q14789 3259 aaKnown RBP13.16□□□□□ -0.3
SVIP-201ENST00000354193 UQCRFS1P1P0C7P4 283 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 SPATA5Q8NB90 893 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 ANP32BQ92688 251 aaKnown RBP13.16□□□□□ -0.3
SVIP-201ENST00000354193 ZKSCAN3Q9BRR0 538 aa13.16□□□□□ -0.3
SVIP-201ENST00000354193 NOL10Q9BSC4 688 aaKnown RBP13.16□□□□□ -0.3
SVIP-201ENST00000354193 APOBRQ0VD83 1088 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 TXNRD1Q16881 649 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 PUS7LQ9H0K6 701 aaKnown RBP13.15□□□□□ -0.3
SVIP-201ENST00000354193 NARFQ9UHQ1 456 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 PHRF1Q9P1Y6 1649 aaKnown RBP13.15□□□□□ -0.3
SVIP-201ENST00000354193 GJB2P29033 226 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 SLC4A4Q9Y6R1 1079 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 MARF1Q9Y4F3 1742 aaKnown RBP13.15□□□□□ -0.3
SVIP-201ENST00000354193 NFIXQ14938 502 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 FAM173BQ6P4H8 233 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 NCOA5Q9HCD5 579 aaKnown RBP13.15□□□□□ -0.3
SVIP-201ENST00000354193 RIPOR2Q9Y4F9 1068 aa13.15□□□□□ -0.3
SVIP-201ENST00000354193 A0A0G2JLW4 131 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 PRDM1O75626 825 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 ANAPC15P60006 121 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 CTNNA3Q9UI47 895 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 NACAP1Q9BZK3 213 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 SERPINB2P05120 415 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 RASGRF1Q13972 1273 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 KRT32Q14532 448 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 MICU3Q86XE3 530 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 TFIP11Q9UBB9 837 aaKnown RBP13.14□□□□□ -0.31
SVIP-201ENST00000354193 M0R2C6 588 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 RANBP6O60518 1105 aaKnown RBP13.14□□□□□ -0.31
SVIP-201ENST00000354193 CYP21A2P08686 494 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 HSPD1P10809 573 aaKnown RBP13.14□□□□□ -0.31
SVIP-201ENST00000354193 RBM5P52756 815 aaKnown RBP eCLIP13.14□□□□□ -0.31
SVIP-201ENST00000354193 SAMD1Q6SPF0 538 aaPredicted RBP13.14□□□□□ -0.31
SVIP-201ENST00000354193 PIH1D3Q9NQM4 214 aaKnown RBP13.14□□□□□ -0.31
SVIP-201ENST00000354193 HMG20BQ9P0W2 317 aa13.14□□□□□ -0.31
SVIP-201ENST00000354193 CIAO1O76071 339 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 UFL1O94874 794 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 TTF1Q15361 905 aaPredicted RBP13.13□□□□□ -0.31
SVIP-201ENST00000354193 SYNE3Q6ZMZ3 975 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 LRRC4BQ9NT99 713 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 RUFY3Q7L099 469 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 AMIGO3Q86WK7 504 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 SDR42E1Q8WUS8 393 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 MAST3O60307 1309 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 MROH5Q6ZUA9 1318 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 LARGE1O95461 756 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 NTSR2O95665 410 aa13.13□□□□□ -0.31
SVIP-201ENST00000354193 NAA16Q6N069 864 aaPredicted RBP13.13□□□□□ -0.31
SVIP-201ENST00000354193 CWC22Q9HCG8 908 aaKnown RBP13.13□□□□□ -0.31
SVIP-201ENST00000354193 BAG4O95429 457 aaKnown RBP13.12□□□□□ -0.31
SVIP-201ENST00000354193 CYP2E1P05181 493 aaPredicted RBP13.12□□□□□ -0.31
SVIP-201ENST00000354193 CSF1RP07333 972 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 PDE6AP16499 860 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 APPBP2Q92624 585 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 INCENPQ9NQS7 918 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 GPHNQ9NQX3 736 aaPredicted RBP13.12□□□□□ -0.31
SVIP-201ENST00000354193 PHLPP1O60346 1717 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 ERICH2A1L162 156 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 RNF214Q8ND24 703 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 MAP4K1Q92918 833 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 LMO7Q8WWI1 1683 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 GOLGA6L3A6NEY3 463 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 PRKAB2O43741 272 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 FGAP02671 866 aa13.12□□□□□ -0.31
SVIP-201ENST00000354193 HIBADHP31937 336 aaKnown RBP13.12□□□□□ -0.31
SVIP-201ENST00000354193 RBM6P78332 1123 aaKnown RBP13.12□□□□□ -0.31
SVIP-201ENST00000354193 EN1Q05925 392 aaPredicted RBP13.12□□□□□ -0.31
SVIP-201ENST00000354193 B4E1Z4 1266 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 CTDSPL2Q05D32 466 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 ZNF772Q68DY9 489 aaPredicted RBP13.11□□□□□ -0.31
SVIP-201ENST00000354193 GOLGA8BA8MQT2 603 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 ZFYP08048 801 aaPredicted RBP13.11□□□□□ -0.31
SVIP-201ENST00000354193 USP5P45974 858 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 MYL10Q9BUA6 226 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 AATFQ9NY61 560 aaKnown RBP eCLIP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms