RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 DBNDD1Q9H9R9 158 aa27.38■■□□□ 1.97
SHMT1-203ENST00000354098 LPIN2Q92539 896 aa27.37■■□□□ 1.97
SHMT1-203ENST00000354098 C15orf52Q6ZUT6 534 aaKnown RBP27.36■■□□□ 1.97
SHMT1-203ENST00000354098 RHPN1Q8TCX5 695 aa27.36■■□□□ 1.97
SHMT1-203ENST00000354098 JDP2Q8WYK2 163 aa27.36■■□□□ 1.97
SHMT1-203ENST00000354098 GYG1P46976 350 aa27.36■■□□□ 1.97
SHMT1-203ENST00000354098 ERC1Q8IUD2 1116 aa27.36■■□□□ 1.97
SHMT1-203ENST00000354098 NIM1KQ8IY84 436 aa27.36■■□□□ 1.97
SHMT1-203ENST00000354098 AKAP2Q9Y2D5 859 aa27.36■■□□□ 1.97
SHMT1-203ENST00000354098 A0A1B0GUL7 405 aa27.35■■□□□ 1.97
SHMT1-203ENST00000354098 RAB11FIP3O75154 756 aa27.35■■□□□ 1.97
SHMT1-203ENST00000354098 IL1RAPL2Q9NP60 686 aa27.35■■□□□ 1.97
SHMT1-203ENST00000354098 IFIT1P09914 478 aaKnown RBP27.34■■□□□ 1.97
SHMT1-203ENST00000354098 SLC5A1P13866 664 aa27.34■■□□□ 1.97
SHMT1-203ENST00000354098 FAM84BQ96KN1 310 aaPredicted RBP27.34■■□□□ 1.97
SHMT1-203ENST00000354098 RWDD1Q9H446 243 aaPredicted RBP27.34■■□□□ 1.97
SHMT1-203ENST00000354098 DICER1Q9UPY3 1922 aaKnown RBP27.34■■□□□ 1.97
SHMT1-203ENST00000354098 YDJCA8MPS7 323 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 G3V3G9 751 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 ECE2O60344 883 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 ADORA1P30542 326 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 TNNI3KQ59H18 835 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 DCAF8Q5TAQ9 597 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 KIF1BPQ96EK5 621 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 NEUROD6Q96NK8 337 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 BCL11AQ9H165 835 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 KCNQ5Q9NR82 932 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 FPGT-TNNI3KV9GXZ4 949 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 ZNRF3Q9ULT6 936 aa27.33■■□□□ 1.97
SHMT1-203ENST00000354098 ZNF609O15014 1411 aa27.32■■□□□ 1.96
SHMT1-203ENST00000354098 FZD9O00144 591 aa27.32■■□□□ 1.96
SHMT1-203ENST00000354098 BCAMP50895 628 aa27.32■■□□□ 1.96
SHMT1-203ENST00000354098 EAF2Q96CJ1 260 aaPredicted RBP27.32■■□□□ 1.96
SHMT1-203ENST00000354098 GPR108Q9NPR9 543 aa27.32■■□□□ 1.96
SHMT1-203ENST00000354098 SMARCA5O60264 1052 aaPredicted RBP27.31■■□□□ 1.96
SHMT1-203ENST00000354098 COA1Q9GZY4 146 aa27.31■■□□□ 1.96
SHMT1-203ENST00000354098 TIAM2Q8IVF5 1701 aa27.31■■□□□ 1.96
SHMT1-203ENST00000354098 CHD4Q14839 1912 aa27.31■■□□□ 1.96
SHMT1-203ENST00000354098 HIBADHP31937 336 aaKnown RBP27.3■■□□□ 1.96
SHMT1-203ENST00000354098 FBXO33Q7Z6M2 555 aa27.3■■□□□ 1.96
SHMT1-203ENST00000354098 XAGE2Q96GT9 111 aa27.3■■□□□ 1.96
SHMT1-203ENST00000354098 LRRCC1Q9C099 1032 aa27.3■■□□□ 1.96
SHMT1-203ENST00000354098 CD209Q9NNX6 404 aa27.3■■□□□ 1.96
SHMT1-203ENST00000354098 CAVIN4Q5BKX8 364 aa27.3■■□□□ 1.96
SHMT1-203ENST00000354098 ZNF804AQ7Z570 1209 aa27.3■■□□□ 1.96
SHMT1-203ENST00000354098 ZNF541Q9H0D2 1346 aa27.29■■□□□ 1.96
SHMT1-203ENST00000354098 CCDC8Q9H0W5 538 aaPredicted RBP27.29■■□□□ 1.96
SHMT1-203ENST00000354098 PODNQ7Z5L7 613 aa27.28■■□□□ 1.96
SHMT1-203ENST00000354098 GCC1Q96CN9 775 aa27.28■■□□□ 1.96
SHMT1-203ENST00000354098 DBNDD2Q9BQY9 259 aa27.28■■□□□ 1.96
SHMT1-203ENST00000354098 TLR7Q9NYK1 1049 aaKnown RBP27.28■■□□□ 1.96
SHMT1-203ENST00000354098 RAD17O75943 681 aa27.27■■□□□ 1.96
SHMT1-203ENST00000354098 CXCL9Q07325 125 aa27.27■■□□□ 1.96
SHMT1-203ENST00000354098 AACSQ86V21 672 aa27.27■■□□□ 1.96
SHMT1-203ENST00000354098 VPS37DQ86XT2 251 aa27.27■■□□□ 1.96
SHMT1-203ENST00000354098 IQSEC3Q9UPP2 1182 aaPredicted RBP27.27■■□□□ 1.96
SHMT1-203ENST00000354098 IL1R1P14778 569 aa27.27■■□□□ 1.96
SHMT1-203ENST00000354098 EIF6P56537 245 aaKnown RBP27.27■■□□□ 1.96
SHMT1-203ENST00000354098 CLASRPQ8N2M8 674 aaKnown RBP27.27■■□□□ 1.96
SHMT1-203ENST00000354098 ARAP2Q8WZ64 1704 aa27.26■■□□□ 1.95
SHMT1-203ENST00000354098 PHKA1P46020 1223 aa27.26■■□□□ 1.95
SHMT1-203ENST00000354098 SMC5Q8IY18 1101 aa27.26■■□□□ 1.95
SHMT1-203ENST00000354098 DBNLQ9UJU6 430 aaKnown RBP27.26■■□□□ 1.95
SHMT1-203ENST00000354098 ZC3H4Q9UPT8 1303 aaKnown RBP27.26■■□□□ 1.95
SHMT1-203ENST00000354098 CCDC102BQ68D86 513 aa27.25■■□□□ 1.95
SHMT1-203ENST00000354098 TDRD7Q8NHU6 1098 aaKnown RBP27.25■■□□□ 1.95
SHMT1-203ENST00000354098 SCN9AQ15858 1988 aa27.24■■□□□ 1.95
SHMT1-203ENST00000354098 GORABQ5T7V8 394 aa27.24■■□□□ 1.95
SHMT1-203ENST00000354098 ANKRD45Q5TZF3 282 aa27.24■■□□□ 1.95
SHMT1-203ENST00000354098 B4GALNT3Q6L9W6 998 aa27.24■■□□□ 1.95
SHMT1-203ENST00000354098 DDNO94850 711 aaPredicted RBP27.23■■□□□ 1.95
SHMT1-203ENST00000354098 CIAPIN1Q6FI81 312 aa27.23■■□□□ 1.95
SHMT1-203ENST00000354098 JAG2Q9Y219 1238 aa27.23■■□□□ 1.95
SHMT1-203ENST00000354098 PSMD14O00487 310 aa27.22■■□□□ 1.95
SHMT1-203ENST00000354098 GTF2IP78347 998 aa27.22■■□□□ 1.95
SHMT1-203ENST00000354098 GJA3Q9Y6H8 435 aa27.22■■□□□ 1.95
SHMT1-203ENST00000354098 FBXW7Q969H0 707 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 USP17L3A6NCW0 530 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 USP17L4A6NCW7 530 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 GLTPD2A6NH11 291 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 IFIT2P09913 472 aaKnown RBP27.21■■□□□ 1.95
SHMT1-203ENST00000354098 TTLL5Q6EMB2 1281 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 DPY19L2Q6NUT2 758 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 USP17L1Q7RTZ2 530 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 MXD3Q9BW11 206 aa27.21■■□□□ 1.95
SHMT1-203ENST00000354098 FRAT2O75474 233 aaPredicted RBP27.2■■□□□ 1.94
SHMT1-203ENST00000354098 C16orf71Q8IYS4 520 aaPredicted RBP27.2■■□□□ 1.94
SHMT1-203ENST00000354098 TNIP1Q15025 636 aa27.19■■□□□ 1.94
SHMT1-203ENST00000354098 GPC2Q8N158 579 aa27.19■■□□□ 1.94
SHMT1-203ENST00000354098 GNL3LQ9NVN8 582 aaKnown RBP27.19■■□□□ 1.94
SHMT1-203ENST00000354098 ZBTB12Q9Y330 459 aaPredicted RBP27.19■■□□□ 1.94
SHMT1-203ENST00000354098 VIL1P09327 827 aaKnown RBP27.18■■□□□ 1.94
SHMT1-203ENST00000354098 DACT2Q5SW24 774 aa27.18■■□□□ 1.94
SHMT1-203ENST00000354098 STRIP1Q5VSL9 837 aa27.18■■□□□ 1.94
SHMT1-203ENST00000354098 COL1A1P02452 1464 aaPredicted RBP27.17■■□□□ 1.94
SHMT1-203ENST00000354098 YY1P25490 414 aa27.17■■□□□ 1.94
SHMT1-203ENST00000354098 CHAF1AQ13111 956 aaPredicted RBP27.17■■□□□ 1.94
SHMT1-203ENST00000354098 CCDC158Q5M9N0 1113 aa27.17■■□□□ 1.94
SHMT1-203ENST00000354098 ZNF526Q8TF50 670 aaPredicted RBP27.17■■□□□ 1.94
SHMT1-203ENST00000354098 RASGRF1Q13972 1273 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms