RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 LEMD3Q9Y2U8 911 aa23.3■■□□□ 1.32
CHMP4A-201ENST00000347519 UFL1O94874 794 aa23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 ATP2B4P23634 1241 aa23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 KCNJ4P48050 445 aa23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 DALRD3Q5D0E6 543 aaKnown RBP23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 MPNDQ8N594 471 aa23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 PI4K2BQ8TCG2 481 aa23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 OSBPL3Q9H4L5 887 aa23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 GGA1Q9UJY5 639 aa23.29■■□□□ 1.32
CHMP4A-201ENST00000347519 IFIT1P09914 478 aaKnown RBP23.28■■□□□ 1.32
CHMP4A-201ENST00000347519 SYT17Q9BSW7 474 aa23.28■■□□□ 1.32
CHMP4A-201ENST00000347519 ECHDC1Q9NTX5 307 aa23.28■■□□□ 1.32
CHMP4A-201ENST00000347519 PHKA1P46020 1223 aa23.27■■□□□ 1.32
CHMP4A-201ENST00000347519 GYG1P46976 350 aa23.27■■□□□ 1.32
CHMP4A-201ENST00000347519 DPP8Q6V1X1 898 aaPredicted RBP23.27■■□□□ 1.32
CHMP4A-201ENST00000347519 ARFGEF1Q9Y6D6 1849 aa23.27■■□□□ 1.32
CHMP4A-201ENST00000347519 GSPT1P15170 499 aaKnown RBP23.27■■□□□ 1.31
CHMP4A-201ENST00000347519 BCAMP50895 628 aa23.27■■□□□ 1.31
CHMP4A-201ENST00000347519 TTC41PQ6P2S7 1318 aa23.26■■□□□ 1.31
CHMP4A-201ENST00000347519 AKAP11Q9UKA4 1901 aa23.26■■□□□ 1.31
CHMP4A-201ENST00000347519 C6orf229H3BNL8 230 aa23.26■■□□□ 1.31
CHMP4A-201ENST00000347519 CCDC102BQ68D86 513 aa23.26■■□□□ 1.31
CHMP4A-201ENST00000347519 FAM84BQ96KN1 310 aaPredicted RBP23.26■■□□□ 1.31
CHMP4A-201ENST00000347519 BCS1LQ9Y276 419 aa23.26■■□□□ 1.31
CHMP4A-201ENST00000347519 AOX1Q06278 1338 aa23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 SCARF1Q14162 830 aa23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 CCDC93Q567U6 631 aa23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 GORABQ5T7V8 394 aa23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 TTC22Q5TAA0 569 aa23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 CC2D2BQ6DHV5 1058 aa23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 FBXO33Q7Z6M2 555 aa23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 TMX4Q9H1E5 349 aaPredicted RBP23.25■■□□□ 1.31
CHMP4A-201ENST00000347519 FER1L6Q2WGJ9 1857 aa23.24■■□□□ 1.31
CHMP4A-201ENST00000347519 ATP5JP18859 108 aa23.24■■□□□ 1.31
CHMP4A-201ENST00000347519 C15orf52Q6ZUT6 534 aaKnown RBP23.24■■□□□ 1.31
CHMP4A-201ENST00000347519 GPATCH3Q96I76 525 aa23.24■■□□□ 1.31
CHMP4A-201ENST00000347519 BOLA2Q9H3K6 86 aa23.24■■□□□ 1.31
CHMP4A-201ENST00000347519 NDUFB9Q9Y6M9 179 aa23.24■■□□□ 1.31
CHMP4A-201ENST00000347519 RIMBP2O15034 1052 aa23.23■■□□□ 1.31
CHMP4A-201ENST00000347519 MAP4K4O95819 1239 aaPredicted RBP23.23■■□□□ 1.31
CHMP4A-201ENST00000347519 TTC39AQ5SRH9 613 aa23.23■■□□□ 1.31
CHMP4A-201ENST00000347519 RTFDC1Q9BY42 306 aaPredicted RBP23.23■■□□□ 1.31
CHMP4A-201ENST00000347519 CCDC158Q5M9N0 1113 aa23.22■■□□□ 1.31
CHMP4A-201ENST00000347519 MED23Q9ULK4 1368 aa23.22■■□□□ 1.31
CHMP4A-201ENST00000347519 GLRX3O76003 335 aaKnown RBP23.21■■□□□ 1.31
CHMP4A-201ENST00000347519 ARID4AP29374 1257 aaPredicted RBP23.21■■□□□ 1.31
CHMP4A-201ENST00000347519 PI16Q6UXB8 463 aa23.21■■□□□ 1.31
CHMP4A-201ENST00000347519 EDC3Q96F86 508 aaKnown RBP23.21■■□□□ 1.31
CHMP4A-201ENST00000347519 IQSEC3Q9UPP2 1182 aaPredicted RBP23.21■■□□□ 1.31
CHMP4A-201ENST00000347519 CHD4Q14839 1912 aa23.21■■□□□ 1.31
CHMP4A-201ENST00000347519 MYH13Q9UKX3 1938 aa23.2■■□□□ 1.31
CHMP4A-201ENST00000347519 HIBADHP31937 336 aaKnown RBP23.2■■□□□ 1.3
CHMP4A-201ENST00000347519 MCAMP43121 646 aa23.2■■□□□ 1.3
CHMP4A-201ENST00000347519 RTKN2Q8IZC4 609 aa23.2■■□□□ 1.3
CHMP4A-201ENST00000347519 SNRKQ9NRH2 765 aa23.2■■□□□ 1.3
CHMP4A-201ENST00000347519 COL1A1P02452 1464 aaPredicted RBP23.2■■□□□ 1.3
CHMP4A-201ENST00000347519 ERC2O15083 957 aa23.19■■□□□ 1.3
CHMP4A-201ENST00000347519 CAVIN4Q5BKX8 364 aa23.19■■□□□ 1.3
CHMP4A-201ENST00000347519 ZNF512BQ96KM6 892 aaPredicted RBP23.19■■□□□ 1.3
CHMP4A-201ENST00000347519 HAUS7Q99871 368 aa23.19■■□□□ 1.3
CHMP4A-201ENST00000347519 MYO5AQ9Y4I1 1855 aaKnown RBP23.19■■□□□ 1.3
CHMP4A-201ENST00000347519 AK9Q5TCS8 1911 aa23.18■■□□□ 1.3
CHMP4A-201ENST00000347519 NFKBIEO00221 500 aa23.18■■□□□ 1.3
CHMP4A-201ENST00000347519 YY1P25490 414 aa23.18■■□□□ 1.3
CHMP4A-201ENST00000347519 RASGRF1Q13972 1273 aa23.18■■□□□ 1.3
CHMP4A-201ENST00000347519 SOGA3Q5TF21 947 aa23.18■■□□□ 1.3
CHMP4A-201ENST00000347519 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.18■■□□□ 1.3
CHMP4A-201ENST00000347519 HMG20BQ9P0W2 317 aa23.18■■□□□ 1.3
CHMP4A-201ENST00000347519 UQCRFS1P1P0C7P4 283 aa23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 SDSP20132 328 aa23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 FKBP4Q02790 459 aaKnown RBP eCLIP23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 WASHC4Q2M389 1173 aa23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 BMP2KLQ5H9B9 411 aa23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 PSMD1Q99460 953 aa23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 DNAJC2Q99543 621 aaKnown RBP23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 COL4A5P29400 1685 aa23.17■■□□□ 1.3
CHMP4A-201ENST00000347519 ZAP70P43403 619 aa23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 DOK7Q18PE1 504 aa23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 GRIPAP1Q4V328 841 aa23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 VPS37DQ86XT2 251 aa23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 EYA3Q99504 573 aa23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 ZC3H12CQ9C0D7 883 aaKnown RBP23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 ANTXR1Q9H6X2 564 aa23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 CD209Q9NNX6 404 aa23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 ZNF277Q9NRM2 450 aaPredicted RBP23.16■■□□□ 1.3
CHMP4A-201ENST00000347519 YBX3P16989 372 aaKnown RBP eCLIP23.15■■□□□ 1.3
CHMP4A-201ENST00000347519 AOC3Q16853 763 aa23.15■■□□□ 1.3
CHMP4A-201ENST00000347519 ZNF804AQ7Z570 1209 aa23.15■■□□□ 1.3
CHMP4A-201ENST00000347519 SUPT20HQ8NEM7 779 aa23.15■■□□□ 1.3
CHMP4A-201ENST00000347519 TDRD7Q8NHU6 1098 aaKnown RBP23.15■■□□□ 1.3
CHMP4A-201ENST00000347519 UTRNP46939 3433 aa23.14■■□□□ 1.3
CHMP4A-201ENST00000347519 GOLGB1Q14789 3259 aaKnown RBP23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 TRIM6-TRIM34B2RNG4 842 aa23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 GOLIM4O00461 696 aa23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 IL1R1P14778 569 aa23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 PRELPP51888 382 aa23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 RASSF7Q02833 373 aa23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 KIAA2012Q0VF49 1180 aa23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 SPATA5Q8NB90 893 aa23.14■■□□□ 1.29
CHMP4A-201ENST00000347519 RILPL2Q969X0 211 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms