RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 E7EWF7 191 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 KDM4AO75164 1064 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 ATP2B3Q16720 1220 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 ZSCAN30Q86W11 494 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 TMEM87AQ8NBN3 555 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 SH3TC1Q8TE82 1336 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 LIG1P18858 919 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 PDCP20941 246 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 TSGA10IPQ3SY00 556 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 PUS7LQ9H0K6 701 aaKnown RBP12.24□□□□□ -0.45
LIMA1-201ENST00000341247 HELLSQ9NRZ9 838 aa12.24□□□□□ -0.45
LIMA1-201ENST00000341247 CYP19A1P11511 503 aaPredicted RBP12.23□□□□□ -0.45
LIMA1-201ENST00000341247 DHX32Q7L7V1 743 aaKnown RBP12.23□□□□□ -0.45
LIMA1-201ENST00000341247 PTF1AQ7RTS3 328 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 DZIP3Q86Y13 1208 aaKnown RBP12.23□□□□□ -0.45
LIMA1-201ENST00000341247 CKAP2LQ8IYA6 745 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 TTLL11Q8NHH1 800 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 SPATA32Q96LK8 384 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 IDH1O75874 414 aaKnown RBP12.23□□□□□ -0.45
LIMA1-201ENST00000341247 CIAO1O76071 339 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 TEX13AQ9BXU3 409 aaPredicted RBP12.23□□□□□ -0.45
LIMA1-201ENST00000341247 FTOQ9C0B1 505 aaKnown RBP eCLIP12.23□□□□□ -0.45
LIMA1-201ENST00000341247 GPR108Q9NPR9 543 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 KCNQ4P56696 695 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 ZNF830Q96NB3 372 aaPredicted RBP12.23□□□□□ -0.45
LIMA1-201ENST00000341247 AKAP2Q9Y2D5 859 aa12.23□□□□□ -0.45
LIMA1-201ENST00000341247 DOT1LQ8TEK3 1739 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 JCADQ9P266 1359 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 ANKRD18BA2A2Z9 1011 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 APPP05067 770 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 CSPP1Q1MSJ5 1256 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 UBN2Q6ZU65 1347 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 MCAMP43121 646 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 BICD2Q8TD16 824 aa12.22□□□□□ -0.45
LIMA1-201ENST00000341247 LTBP4Q8N2S1 1624 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 PALLDQ8WX93 1383 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 CTSWP56202 376 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 OTUD7BQ6GQQ9 843 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 STK11IPQ8N1F8 1099 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 PDLIM2Q96JY6 352 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 DSCC1Q9BVC3 393 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 DENND2AQ9ULE3 1009 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 PLCH1Q4KWH8 1693 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 MYH14Q7Z406 1995 aaKnown RBP12.21□□□□□ -0.45
LIMA1-201ENST00000341247 COL14A1Q05707 1796 aaKnown RBP12.21□□□□□ -0.45
LIMA1-201ENST00000341247 PTPDC1A2A3K4 754 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 NKX2-3Q8TAU0 364 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 DACT1Q9NYF0 836 aa12.21□□□□□ -0.45
LIMA1-201ENST00000341247 LRP6O75581 1613 aa12.21□□□□□ -0.46
LIMA1-201ENST00000341247 FGAP02671 866 aa12.21□□□□□ -0.46
LIMA1-201ENST00000341247 MYO5AQ9Y4I1 1855 aaKnown RBP12.21□□□□□ -0.46
LIMA1-201ENST00000341247 WNK3Q9BYP7 1800 aa12.21□□□□□ -0.46
LIMA1-201ENST00000341247 FOXP2O15409 715 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 KCNQ2O43526 872 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 CSF1RP07333 972 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 PHKA1P46020 1223 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 SLC9C2Q5TAH2 1124 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 RIPOR2Q9Y4F9 1068 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 VSIG10Q8N0Z9 540 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 NSUN7Q8NE18 718 aaKnown RBP12.2□□□□□ -0.46
LIMA1-201ENST00000341247 LEO1Q8WVC0 666 aaPredicted RBP12.2□□□□□ -0.46
LIMA1-201ENST00000341247 GPAA1O43292 621 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 CTDNEP1O95476 244 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 ATP6V1AP38606 617 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 TRIM28Q13263 835 aaKnown RBP12.2□□□□□ -0.46
LIMA1-201ENST00000341247 MARCH10Q8NA82 808 aaPredicted RBP12.2□□□□□ -0.46
LIMA1-201ENST00000341247 SEC31BQ9NQW1 1179 aa12.2□□□□□ -0.46
LIMA1-201ENST00000341247 COL22A1Q8NFW1 1626 aaPredicted RBP12.2□□□□□ -0.46
LIMA1-201ENST00000341247 NUP98P52948 1817 aa12.19□□□□□ -0.46
LIMA1-201ENST00000341247 ALDH8A1Q9H2A2 487 aaPredicted RBP12.19□□□□□ -0.46
LIMA1-201ENST00000341247 GJB4Q9NTQ9 266 aa12.19□□□□□ -0.46
LIMA1-201ENST00000341247 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.19□□□□□ -0.46
LIMA1-201ENST00000341247 IQSEC3Q9UPP2 1182 aaPredicted RBP12.19□□□□□ -0.46
LIMA1-201ENST00000341247 AHDC1Q5TGY3 1603 aaPredicted RBP12.19□□□□□ -0.46
LIMA1-201ENST00000341247 NRAPQ86VF7 1730 aa12.19□□□□□ -0.46
LIMA1-201ENST00000341247 ADCY5O95622 1261 aa12.19□□□□□ -0.46
LIMA1-201ENST00000341247 RXRAP19793 462 aa12.19□□□□□ -0.46
LIMA1-201ENST00000341247 IMMTQ16891 758 aaKnown RBP12.19□□□□□ -0.46
LIMA1-201ENST00000341247 NUP62CLQ9H1M0 184 aa12.19□□□□□ -0.46
LIMA1-201ENST00000341247 PIH1D3Q9NQM4 214 aaKnown RBP12.19□□□□□ -0.46
LIMA1-201ENST00000341247 RFX7Q2KHR2 1363 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 RIC1Q4ADV7 1423 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 PFKFB2O60825 505 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 HMGB1P09429 215 aaKnown RBP12.18□□□□□ -0.46
LIMA1-201ENST00000341247 PDIA3P30101 505 aaKnown RBP12.18□□□□□ -0.46
LIMA1-201ENST00000341247 EXOSC10Q01780 885 aaKnown RBP12.18□□□□□ -0.46
LIMA1-201ENST00000341247 INCENPQ9NQS7 918 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 LAMA4Q16363 1823 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 WTIPA6NIX2 430 aaPredicted RBP12.18□□□□□ -0.46
LIMA1-201ENST00000341247 PIP4K2BP78356 416 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 ITPK1Q13572 414 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 DDB1Q16531 1140 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 PGBD1Q96JS3 809 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 NR1I2O75469 434 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 RESTQ13127 1097 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 SUSD4Q5VX71 490 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 APPBP2Q92624 585 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 FBXW7Q969H0 707 aa12.18□□□□□ -0.46
LIMA1-201ENST00000341247 SCAND2PQ9GZW5 306 aaPredicted RBP12.18□□□□□ -0.46
LIMA1-201ENST00000341247 TNMDQ9H2S6 317 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms