RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 COA1Q9GZY4 146 aa8.11□□□□□ -1.11
CD44-204ENST00000279452 HACL1Q9UJ83 578 aa8.11□□□□□ -1.11
CD44-204ENST00000279452 CLEC11AQ9Y240 323 aa8.11□□□□□ -1.11
CD44-204ENST00000279452 ZBTB12Q9Y330 459 aaPredicted RBP8.11□□□□□ -1.11
CD44-204ENST00000279452 LTBP1Q14766 1721 aa8.11□□□□□ -1.11
CD44-204ENST00000279452 CCDC88AQ3V6T2 1871 aa8.11□□□□□ -1.11
CD44-204ENST00000279452 PNMA6EA0A0J9YXQ4 647 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 KIF3CO14782 793 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 PDE8BO95263 885 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 IFIT1P09914 478 aaKnown RBP8.1□□□□□ -1.11
CD44-204ENST00000279452 SLC5A1P13866 664 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 EPHX2P34913 555 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 IL15P40933 162 aaPredicted RBP8.1□□□□□ -1.11
CD44-204ENST00000279452 GYG1P46976 350 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 RFX5P48382 616 aaPredicted RBP8.1□□□□□ -1.11
CD44-204ENST00000279452 G3BP1Q13283 466 aaKnown RBP eCLIP8.1□□□□□ -1.11
CD44-204ENST00000279452 PDE3AQ14432 1141 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 PUM3Q15397 648 aaKnown RBP8.1□□□□□ -1.11
CD44-204ENST00000279452 CAVIN4Q5BKX8 364 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 KCNQ5Q9NR82 932 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 CEP126Q9P2H0 1117 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 JAG2Q9Y219 1238 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 RIPOR2Q9Y4F9 1068 aa8.1□□□□□ -1.11
CD44-204ENST00000279452 GOLGB1Q14789 3259 aaKnown RBP8.09□□□□□ -1.11
CD44-204ENST00000279452 USP17L3A6NCW0 530 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 USP17L4A6NCW7 530 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 APBB1O00213 710 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 SURF6O75683 361 aaKnown RBP8.09□□□□□ -1.11
CD44-204ENST00000279452 CIAO1O76071 339 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 SCNN1DP51172 638 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 GTF2IP78347 998 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 MTX1Q13505 466 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 UBE4AQ14139 1066 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 ATP2B3Q16720 1220 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 RBM26Q5T8P6 1007 aaKnown RBP8.09□□□□□ -1.11
CD44-204ENST00000279452 CEP85Q6P2H3 762 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 USP17L1Q7RTZ2 530 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 PODNQ7Z5L7 613 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 MICALL2Q8IY33 904 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 L3MBTL3Q96JM7 780 aaPredicted RBP8.09□□□□□ -1.11
CD44-204ENST00000279452 COPRSQ9NQ92 184 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 IQSEC3Q9UPP2 1182 aaPredicted RBP8.09□□□□□ -1.11
CD44-204ENST00000279452 DICER1Q9UPY3 1922 aaKnown RBP8.09□□□□□ -1.11
CD44-204ENST00000279452 WDR90Q96KV7 1748 aa8.09□□□□□ -1.11
CD44-204ENST00000279452 H7C1D1 291 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 HMMRO75330 724 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 TOMM70O94826 608 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 HIBADHP31937 336 aaKnown RBP8.08□□□□□ -1.12
CD44-204ENST00000279452 EPS15P42566 896 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 ATP8B2P98198 1209 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 TFCP2Q12800 502 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 CHAF1AQ13111 956 aaPredicted RBP8.08□□□□□ -1.12
CD44-204ENST00000279452 GORABQ5T7V8 394 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 TTLL5Q6EMB2 1281 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 RSBN1LQ6PCB5 846 aaPredicted RBP8.08□□□□□ -1.12
CD44-204ENST00000279452 ATG9AQ7Z3C6 839 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 PNMA8AQ86V59 439 aaPredicted RBP8.08□□□□□ -1.12
CD44-204ENST00000279452 VGLL2Q8N8G2 317 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 SMC1BQ8NDV3 1235 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 LPIN2Q92539 896 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 NEUROD6Q96NK8 337 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 CRBNQ96SW2 442 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 MXD3Q9BW11 206 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 TAF1DQ9H5J8 278 aaPredicted RBP8.08□□□□□ -1.12
CD44-204ENST00000279452 CD209Q9NNX6 404 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 GPRC5DQ9NZD1 345 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 FBXO3Q9UK99 471 aa8.08□□□□□ -1.12
CD44-204ENST00000279452 UTRNP46939 3433 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 SHTN1A0MZ66 631 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 POTECB2RU33 542 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 F8W031 263 aaPredicted RBP8.07□□□□□ -1.12
CD44-204ENST00000279452 POTEIP0CG38 1075 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 POTEJP0CG39 1038 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 RPS12P25398 132 aaKnown RBP8.07□□□□□ -1.12
CD44-204ENST00000279452 C1QTNF8P60827 252 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 TBC1D10BQ4KMP7 808 aaPredicted RBP8.07□□□□□ -1.12
CD44-204ENST00000279452 KIAA0825Q8IV33 1275 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 OGFOD1Q8N543 542 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 SSH3Q8TE77 659 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 ADARB2Q9NS39 739 aaKnown RBP8.07□□□□□ -1.12
CD44-204ENST00000279452 ZBTB40Q9NUA8 1239 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 CNOT7Q9UIV1 285 aaKnown RBP8.07□□□□□ -1.12
CD44-204ENST00000279452 EXOC6BQ9Y2D4 811 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 AKAP2Q9Y2D5 859 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 SUPT16HQ9Y5B9 1047 aaKnown RBP8.07□□□□□ -1.12
CD44-204ENST00000279452 A0A1B0GUL6 1792 aa8.07□□□□□ -1.12
CD44-204ENST00000279452 MYO3BQ8WXR4 1341 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 A0A1B0GUL7 405 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 VIL1P09327 827 aaKnown RBP8.06□□□□□ -1.12
CD44-204ENST00000279452 USP17L8P0C7I0 530 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 BCAMP50895 628 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 RBM5P52756 815 aaKnown RBP eCLIP8.06□□□□□ -1.12
CD44-204ENST00000279452 POLA2Q14181 598 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 KIF4BQ2VIQ3 1234 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 STRIP1Q5VSL9 837 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 C15orf52Q6ZUT6 534 aaKnown RBP8.06□□□□□ -1.12
CD44-204ENST00000279452 SAMD7Q7Z3H4 446 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 LDHDQ86WU2 507 aa8.06□□□□□ -1.12
CD44-204ENST00000279452 RPAP2Q8IXW5 612 aaPredicted RBP8.06□□□□□ -1.12
CD44-204ENST00000279452 RBM46Q8TBY0 533 aaKnown RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms