RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 A1BGP04217 495 aa19.26■□□□□ 0.67
PHRF1-201ENST00000264555 TSG101Q99816 390 aa19.26■□□□□ 0.67
PHRF1-201ENST00000264555 PRR36Q9H6K5 1346 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 SPTLC2O15270 562 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 FGFR1OPO95684 399 aaKnown RBP19.25■□□□□ 0.67
PHRF1-201ENST00000264555 ATL3Q6DD88 541 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 PHF23Q9BUL5 403 aaPredicted RBP19.25■□□□□ 0.67
PHRF1-201ENST00000264555 NEURL1BA8MQ27 555 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 RNF17Q9BXT8 1623 aaKnown RBP19.25■□□□□ 0.67
PHRF1-201ENST00000264555 BEND3Q5T5X7 828 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 SPHKAPQ2M3C7 1700 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 ITGA6P23229 1130 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 ZFYVE27Q5T4F4 411 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 TPTE2Q6XPS3 522 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 BRAPQ7Z569 592 aa19.25■□□□□ 0.67
PHRF1-201ENST00000264555 C16orf45Q96MC5 204 aaPredicted RBP19.25■□□□□ 0.67
PHRF1-201ENST00000264555 UBA7P41226 1012 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 HS1BP3Q53T59 392 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 KBTBD3Q8NAB2 608 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 KIF5CO60282 957 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 AMPD3Q01432 767 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 CCDC150Q8NCX0 1101 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 IBTKQ9P2D0 1353 aaPredicted RBP19.24■□□□□ 0.67
PHRF1-201ENST00000264555 PHKG2P15735 406 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 TYRO3Q06418 890 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 ISM2Q6H9L7 571 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 CCDC129Q6ZRS4 1044 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 SSH2Q76I76 1423 aa19.24■□□□□ 0.67
PHRF1-201ENST00000264555 ERVV-2B6SEH9 535 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 CDC42BPBQ9Y5S2 1711 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 CALM1P0DP23 149 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 CALM2P0DP24 149 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 CALM3P0DP25 149 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 GNAQP50148 359 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 PARP10Q53GL7 1025 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 TRMT1Q9NXH9 659 aaKnown RBP19.23■□□□□ 0.67
PHRF1-201ENST00000264555 CALML4Q96GE6 196 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 XAGE2Q96GT9 111 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 STX8Q9UNK0 236 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 CCDC148Q8NFR7 591 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 DNAJC25Q9H1X3 360 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 EIF3JO75822 258 aaKnown RBP19.23■□□□□ 0.67
PHRF1-201ENST00000264555 TSPY3P0CV98 308 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 TSPY8P0CW00 308 aa19.23■□□□□ 0.67
PHRF1-201ENST00000264555 LLPHQ9BRT6 129 aaKnown RBP19.22■□□□□ 0.67
PHRF1-201ENST00000264555 RTL9Q8NET4 1388 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 KIF20AO95235 890 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 SPA17Q15506 151 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 SH3TC1Q8TE82 1336 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 PDE8AO60658 829 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 HLA-DOAP06340 250 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 CASQ1P31415 396 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 TM6SF1Q9BZW5 370 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 CWC15Q9P013 229 aaKnown RBP19.22■□□□□ 0.67
PHRF1-201ENST00000264555 ATP5JP18859 108 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 MARCKSP29966 332 aaPredicted RBP19.22■□□□□ 0.67
PHRF1-201ENST00000264555 TMEM132AQ24JP5 1023 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 DDX17Q92841 729 aaKnown RBP19.22■□□□□ 0.67
PHRF1-201ENST00000264555 ZKSCAN5Q9Y2L8 839 aa19.22■□□□□ 0.67
PHRF1-201ENST00000264555 PPP1R12BO60237 982 aaPredicted RBP19.21■□□□□ 0.67
PHRF1-201ENST00000264555 NUP88Q99567 741 aaPredicted RBP19.21■□□□□ 0.67
PHRF1-201ENST00000264555 VAT1LQ9HCJ6 419 aa19.21■□□□□ 0.67
PHRF1-201ENST00000264555 URI1O94763 535 aaPredicted RBP19.21■□□□□ 0.67
PHRF1-201ENST00000264555 PUM3Q15397 648 aaKnown RBP19.21■□□□□ 0.67
PHRF1-201ENST00000264555 APPBP2Q92624 585 aa19.21■□□□□ 0.67
PHRF1-201ENST00000264555 ZNF594Q96JF6 807 aaPredicted RBP19.21■□□□□ 0.67
PHRF1-201ENST00000264555 MADDQ8WXG6 1647 aa19.21■□□□□ 0.67
PHRF1-201ENST00000264555 SLC4A8Q2Y0W8 1093 aa19.21■□□□□ 0.67
PHRF1-201ENST00000264555 CUL5Q93034 780 aa19.21■□□□□ 0.67
PHRF1-201ENST00000264555 ANKRD2Q9GZV1 360 aa19.21■□□□□ 0.67
PHRF1-201ENST00000264555 YEATS4O95619 227 aa19.21■□□□□ 0.67
PHRF1-201ENST00000264555 MIGA1Q8NAN2 632 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 PRIMPOLQ96LW4 560 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 CPLX3Q8WVH0 158 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 ZNF804AQ7Z570 1209 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 CCDC66A2RUB6 948 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 TNIP1Q15025 636 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 C8orf37Q96NL8 207 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 RMND1Q9NWS8 449 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 RTCBQ9Y3I0 505 aaKnown RBP19.2■□□□□ 0.66
PHRF1-201ENST00000264555 GOLGA6L9A6NEM1 432 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 SLAIN2Q9P270 581 aa19.2■□□□□ 0.66
PHRF1-201ENST00000264555 PDCL3Q9H2J4 239 aa19.19■□□□□ 0.66
PHRF1-201ENST00000264555 RDXP35241 583 aaKnown RBP19.19■□□□□ 0.66
PHRF1-201ENST00000264555 UBASH3AP57075 661 aa19.19■□□□□ 0.66
PHRF1-201ENST00000264555 CCDC186Q7Z3E2 898 aa19.19■□□□□ 0.66
PHRF1-201ENST00000264555 TRIM75PA6NK02 468 aa19.19■□□□□ 0.66
PHRF1-201ENST00000264555 ERLIN2O94905 339 aa19.19■□□□□ 0.66
PHRF1-201ENST00000264555 MBD4O95243 580 aa19.19■□□□□ 0.66
PHRF1-201ENST00000264555 AXDND1Q5T1B0 1012 aaPredicted RBP19.19■□□□□ 0.66
PHRF1-201ENST00000264555 ARHGEF25Q86VW2 580 aa19.19■□□□□ 0.66
PHRF1-201ENST00000264555 NOLC1Q14978 699 aaKnown RBP eCLIP19.18■□□□□ 0.66
PHRF1-201ENST00000264555 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.18■□□□□ 0.661e-7■□□□□ 10.8
PHRF1-201ENST00000264555 STAP2Q9UGK3 403 aa19.18■□□□□ 0.66
PHRF1-201ENST00000264555 CACNA2D4Q7Z3S7 1137 aa19.18■□□□□ 0.66
PHRF1-201ENST00000264555 ZNF830Q96NB3 372 aaPredicted RBP19.18■□□□□ 0.66
PHRF1-201ENST00000264555 OSBPL3Q9H4L5 887 aa19.18■□□□□ 0.66
PHRF1-201ENST00000264555 KIF4BQ2VIQ3 1234 aa19.18■□□□□ 0.66
PHRF1-201ENST00000264555 TMCO3Q6UWJ1 677 aa19.18■□□□□ 0.66
PHRF1-201ENST00000264555 AOPEPQ8N6M6 819 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms