RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZBTB24O43167 697 aaPredicted RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 DDX27Q96GQ7 796 aaKnown RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 DCAF17Q5H9S7 520 aaPredicted RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 SH2D4BQ5SQS7 431 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 PPP1R42Q7Z4L9 355 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 LACTBP83111 547 aaPredicted RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 TAF7Q15545 349 aaPredicted RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 SPOUT1Q5T280 376 aaKnown RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 NEK11Q8NG66 645 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 NCAPGQ9BPX3 1015 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 FAM204AQ9H8W3 233 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 BACH1O14867 736 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 RPAP2Q8IXW5 612 aaPredicted RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 ZNF165P49910 485 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 NOP9Q86U38 636 aaKnown RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 MTRF1LQ9UGC7 380 aaKnown RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 SEL1L2Q5TEA6 688 aa12.84□□□□□ -0.35
PTPN4-201ENST00000263708 RSRC1Q96IZ7 334 aaKnown RBP12.84□□□□□ -0.35
PTPN4-201ENST00000263708 FMNL3Q8IVF7 1028 aa12.83□□□□□ -0.35
PTPN4-201ENST00000263708 KCNH5Q8NCM2 988 aa12.83□□□□□ -0.35
PTPN4-201ENST00000263708 TTLL3Q9Y4R7 772 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 STK10O94804 968 aaKnown RBP12.83□□□□□ -0.36
PTPN4-201ENST00000263708 UBXN1Q04323 297 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 EVI5LQ96CN4 794 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 MCM7P33993 719 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 NEDD9Q14511 834 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 FYB2Q5VWT5 728 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 LDHAL6AQ6ZMR3 332 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 MAP3K2Q9Y2U5 619 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 LRRC43Q8N309 656 aa12.83□□□□□ -0.36
PTPN4-201ENST00000263708 ATXN8OSP0DMR3 200 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 VPS18Q9P253 973 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 NFE2L2Q16236 605 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 RAB3IPQ96QF0 476 aaPredicted RBP12.82□□□□□ -0.36
PTPN4-201ENST00000263708 PKD2L1Q9P0L9 805 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 PSMA7O14818 248 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 VIMP08670 466 aaKnown RBP12.82□□□□□ -0.36
PTPN4-201ENST00000263708 RBM27Q9P2N5 1060 aaKnown RBP12.82□□□□□ -0.36
PTPN4-201ENST00000263708 SSFA2P28290 1259 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 ARID4AP29374 1257 aaPredicted RBP12.82□□□□□ -0.36
PTPN4-201ENST00000263708 MCM5P33992 734 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 PPFIBP2Q8ND30 876 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 BACH2Q9BYV9 841 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 CAPN2P17655 700 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 BANK1Q8NDB2 785 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 RAPGEF1Q13905 1077 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 RTN1Q16799 776 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 CPSF2Q9P2I0 782 aaKnown RBP12.82□□□□□ -0.36
PTPN4-201ENST00000263708 FRMD4BQ9Y2L6 1034 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 RABGAP1Q9Y3P9 1069 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 STX10O60499 249 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 TTC31Q49AM3 519 aaPredicted RBP12.82□□□□□ -0.36
PTPN4-201ENST00000263708 THUMPD2Q9BTF0 503 aaKnown RBP12.82□□□□□ -0.36
PTPN4-201ENST00000263708 NKIRAS1Q9NYS0 192 aa12.82□□□□□ -0.36
PTPN4-201ENST00000263708 F6X3S4 739 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 KRT222Q8N1A0 295 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 KRT23Q9C075 422 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 LPXNO60711 386 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 WDR44Q5JSH3 913 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 GPR161Q8N6U8 529 aaKnown RBP12.81□□□□□ -0.36
PTPN4-201ENST00000263708 DNAI1Q9UI46 699 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 CCDC152Q4G0S7 254 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 ZNF644Q9H582 1327 aaPredicted RBP12.81□□□□□ -0.36
PTPN4-201ENST00000263708 ZGPATQ8N5A5 531 aaKnown RBP12.81□□□□□ -0.36
PTPN4-201ENST00000263708 EXOC5O00471 708 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 LMOD1P29536 600 aaPredicted RBP12.81□□□□□ -0.36
PTPN4-201ENST00000263708 GBP1P32455 592 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 ZNF131P52739 623 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 GUCA1BQ9UMX6 200 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 KIF21BO75037 1637 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 ATP5J2-PTCD1G3V325 749 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 MTUS1Q9ULD2 1270 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 SLC4A4Q9Y6R1 1079 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 TRAF1Q13077 416 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 BIRC3Q13489 604 aa12.81□□□□□ -0.36
PTPN4-201ENST00000263708 ZNF853P0CG23 659 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 CACNA2D3Q8IZS8 1091 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 LEO1Q8WVC0 666 aaPredicted RBP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 CYP7A1P22680 504 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 MARCKSP29966 332 aaPredicted RBP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 PCK1P35558 622 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 PSPC1Q8WXF1 523 aaKnown RBP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 ATP5DP30049 168 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 ANO6Q4KMQ2 910 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 RRP36Q96EU6 259 aaKnown RBP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 NEK1Q96PY6 1258 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 IQSEC3Q9UPP2 1182 aaPredicted RBP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 CETN3O15182 167 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 KRT86O43790 486 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 CALCOCO2Q13137 446 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 GABPB2Q8TAK5 448 aaPredicted RBP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 KIFAP3Q92845 792 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 ARHGEF2Q92974 986 aaKnown RBP12.8□□□□□ -0.36
PTPN4-201ENST00000263708 ALG1Q9BT22 464 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 PPP1R12CQ9BZL4 782 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 STMN1P16949 149 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 NAIPQ13075 1403 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 MGEA5O60502 916 aa12.8□□□□□ -0.36
PTPN4-201ENST00000263708 CASC4Q6P4E1 433 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms